Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, L. R. do Amaral, H. D. Arican-Goktas, J. G. Assis, E. H. Baba, O. L. Baron, C. J. Bayne, U. Bickham-Wright, K. K. Biggar, M. Blouin, B. C. Bonning, C. Botka, J. M. Bridger, K. M. Buckley, S. K. Buddenborg, R. Lima Caldeira, J. Carleton, O. S. Carvalho, M. G. Castillo, I. W. Chalmers, M. Christensens, S. Clifton, C. Cosseau, C. Coustau, R. M. Cripps, Y. Cuesta-Astroz, S. F. Cummins, L. di Stephano, N. Dinguirard, D. Duval, S. Emrich, C. Feschotte, R. Feyereisen, P. FitzGerald, C. Fronick, L. Fulton, R. Galinier, S. G. Gava, M. Geusz, K. K. Geyer, G. I. Giraldo-Calderón, M. de Souza Gomes, M. A. Gordy, B. Gourbal, C. Grunau, P. C. Hanington, K. F. Hoffmann, D. Hughes, J. Humphries, D. J. Jackson, L. K. Jannotti-Passos, W. de Jesus Jeremias, S. Jobling, B. Kamel, A. Kapusta, S. Kaur, J. M. Koene, A. B. Kohn, D. Lawson, S. P. Lawton, D. Liang, Y. Limpanont, S. Liu, A. E. Lockyer, T. L. Lovato, F. Ludolf, V. Magrini, D. P. McManus, M. Medina, M. Misra, G. Mitta, G. M. Mkoji, M. J. Montague, C. Montelongo, L. L. Moroz, M. C. Munoz-Torres, U. Niazi, L. R. Noble, F. S. Oliveira, F. S. Pais, A. T. Papenfuss, R. Peace, J. J. Pena, E. A. Pila, T. Quelais, B. J. Raney, J. P. Rast, D. Rollinson, I. C. Rosse, B. Rotgans, E. J. Routledge, K. M. Ryan, L. L. S. Scholte, K. B. Storey, M. Swain, J. A. Tennessen, C. Tomlinson, D. L. Trujillo, E. V. Volpi, A. J. Walker, T. Wang, I. Wannaporn, W. C. Warren, X. J. Wu, T. P. Yoshino, M. Yusuf, S. M. Zhang, M. Zhao, and R. K. Wilson. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nat Commun. 2017;8:15451. https://doi.org/10.1038/ncomms15451.
Article
PubMed
PubMed Central
Google Scholar
Akalin A, Kormaksson M, Li S, Garrett-Bakelman FE, Figueroa ME, Melnick A, Mason CE. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles. Genome Biol. 2012;13(10):R87. https://doi.org/10.1186/gb-2012-13-10-r87.
Article
PubMed
PubMed Central
Google Scholar
Aliaga B, Bulla I, Mouahid G, Duval D, Grunau C. Universality of the DNA methylation codes in Eucaryotes. Sci Rep. 2019;9(1):173. https://doi.org/10.1038/s41598-018-37407-8.
Article
PubMed
PubMed Central
Google Scholar
Allan ERO, Bollmann S, Peremyslova E, Blouin M. Neither heat pulse, nor multigenerational exposure to a modest increase in water temperature, alters the susceptibility of Guadeloupean. PeerJ. 2020;8: e9059. https://doi.org/10.7717/peerj.9059.
Article
PubMed
PubMed Central
Google Scholar
Athanasio CG, Sommer U, Viant MR, Chipman JK, Mirbahai L. Use of 5-azacytidine in a proof-of-concept study to evaluate the impact of pre-natal and post-natal exposures, as well as within generation persistent DNA methylation changes in Daphnia. Ecotoxicology. 2018;27(5):556–68. https://doi.org/10.1007/s10646-018-1927-3.
Article
PubMed
PubMed Central
Google Scholar
Baccarelli A, Bollati V. Epigenetics and environmental chemicals. Curr Opin Pediatr. 2009;21(2):243–51.
Article
Google Scholar
Bal N, Kumar A, Nugegoda D. Assessing multigenerational effects of prednisolone to the freshwater snail, Physa acuta (Gastropoda: Physidae). J Hazard Mater. 2017;339:281–91. https://doi.org/10.1016/j.jhazmat.2017.06.024.
Article
PubMed
Google Scholar
Baubec T, Pecinka A, Rozhon W, Mittelsten Scheid O. Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine. Plant J. 2009;57(3):542–54. https://doi.org/10.1111/j.1365-313X.2008.03699.x.
Article
PubMed
Google Scholar
Bossdorf O, Richards CL, Pigliucci M. Epigenetics for ecologists. Ecol Lett. 2008;11(2):106–15. https://doi.org/10.1111/j.1461-0248.2007.01130.x.
Article
PubMed
Google Scholar
Boyd VL, Zon G. Bisulfite conversion of genomic DNA for methylation analysis: protocol simplification with higher recovery applicable to limited samples and increased throughput. Anal Biochem. 2004;326(2):278–80. https://doi.org/10.1016/j.ab.2003.11.020.
Article
PubMed
Google Scholar
Capuano F, Mülleder M, Kok R, Blom HJ, Ralser M. Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species. Anal Chem. 2014;86(8):3697–702. https://doi.org/10.1021/ac500447w.
Article
PubMed
PubMed Central
Google Scholar
Carvalho S, Caldeira RL, Simpson AJ, Vidigal TH. Genetic variability and molecular identification of Brazilian Biomphalaria species (Mollusca: Planorbidae). Parasitology. 2001;123(Suppl):S197-209. https://doi.org/10.1017/s0031182001008058.
Article
PubMed
Google Scholar
Ceccaldi A, Rajavelu A, Champion C, Rampon C, Jurkowska R, Jankevicius G, Senamaud-Beaufort C, Ponger L, Gagey N, Ali HD, Tost J, Vriz S, Ros S, Dauzonne D, Jeltsch A, Guianvarc’h D, Arimondo PB. C5-DNA methyltransferase inhibitors: from screening to effects on zebrafish embryo development. ChemBioChem. 2011;12(9):1337–45. https://doi.org/10.1002/cbic.201100130.
Article
PubMed
Google Scholar
Champion C, Guianvarc’h D, Sénamaud-Beaufort C, Jurkowska RZ, Jeltsch A, Ponger L, Guieysse-Peugeot AL. Mechanistic insights on the inhibition of c5 DNA methyltransferases by zebularine. PLoS ONE. 2010;5(8): e12388. https://doi.org/10.1371/journal.pone.0012388.
Article
PubMed
PubMed Central
Google Scholar
Chen T. Mechanistic and functional links between histone methylation and DNA methylation. Prog Mol Biol Transl Sci. 2011;101:335–48. https://doi.org/10.1016/B978-0-12-387685-0.00010-X.
Article
PubMed
Google Scholar
Cheng JC, Weisenberger DJ, Gonzales FA, Liang G, Xu GL, Hu YG, Marquez VE, Jones PA. Continuous zebularine treatment effectively sustains demethylation in human bladder cancer cells. Mol Cell Biol. 2004;24(3):1270–8.
Article
Google Scholar
Cosseau C, Wolkenhauer O, Padalino G, Geyer KK, Hoffmann KF, Grunau C. (Epi)genetic Inheritance in Schistosoma mansoni: A Systems Approach. Trends Parasitol. 2017;33(4):285–94. https://doi.org/10.1016/j.pt.2016.12.002.
Article
PubMed
PubMed Central
Google Scholar
Cosseau C, Azzi A, Rognon A, Boissier J, Gourbiere S, Roger E, Mitta G, Grunau C. Epigenetic and phenotypic variability in populations of Schistosoma mansoni–a possible kick-off for adaptive host/parasite evolution. Oikos. 2010;119(4):669–78.
Article
Google Scholar
de Lorgeril J, Lucasson A, Petton B, Toulza E, Montagnani C, Clerissi C, Vidal-Dupiol J, Chaparro C, Galinier R, J.-Michel Escoubas, P. Haffner, L. Dégremont, G. M. Charrière, M. Lafont, A. Delort, A. Vergnes, M. Chiarello, N. Faury, T. Rubio, M. A. Leroy, A. Pérignon, D. Régler, B. Morga, M. Alunno-Bruscia, P. Boudry, F. Le Roux, D. Destoumieux-Garzόn, Y. Gueguen, and G. Mitta. Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters. Nat Commun. 2018;9(1):4215. https://doi.org/10.1038/s41467-018-06659-3.
Article
PubMed
PubMed Central
Google Scholar
Diala ES, Hoffman RM. Hypomethylation of HeLa cell DNA and the absence of 5-methylcytosine in SV40 and adenovirus (type 2) DNA: analysis by HPLC. Biochem Biophys Res Commun. 1982;107(1):19–26.
Article
Google Scholar
Dreyfuss G, Vignoles P, Abrous M, Rondelaud D. Unusual snail species involved in the transmission of Fasciola hepatica in watercress beds in central France. Parasite. 2002;9(2):113–20. https://doi.org/10.1051/parasite/2002092113.
Article
PubMed
Google Scholar
Dupont C, Armant DR, Brenner CA. Epigenetics: definition, mechanisms and clinical perspective. Semin Reprod Med. 2009;27(5):351–7. https://doi.org/10.1055/s-0029-1237423.
Article
PubMed
PubMed Central
Google Scholar
Erdmann A, Halby L, Fahy J, Arimondo PB. Targeting DNA Methylation with Small Molecules: What’s Next? J Med Chem. 2015;58(6):2569–83. https://doi.org/10.1021/jm500843d.
Article
PubMed
Google Scholar
Fallet M, Luquet E, David P, Cosseau C. Epigenetic inheritance and intergenerational effects in mollusks. Gene. 2020;729: 144166. https://doi.org/10.1016/j.gene.2019.144166.
Article
PubMed
Google Scholar
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A. 2010;107(19):8689–94. https://doi.org/10.1073/pnas.1002720107.
Article
PubMed
PubMed Central
Google Scholar
Flotho C, Claus R, Batz C, Schneider M, Sandrock I, Ihde S, Plass C, Niemeyer CM, Lübbert M. The DNA methyltransferase inhibitors azacitidine, decitabine and zebularine exert differential effects on cancer gene expression in acute myeloid leukemia cells. Leukemia. 2009;23(6):1019–28. https://doi.org/10.1038/leu.2008.397.
Article
PubMed
Google Scholar
Fneich S, Dheilly N, Adema C, Rognon A, Reichelt M, Bulla J, Grunau C, Cosseau C. 5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni. Parasit Vectors. 2013;6(1):167.
Article
Google Scholar
Frommer M, McDonald LE, Millar DS, Collis CM, Watt F, Grigg GW, Molloy PL, Paul CL. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci U S A. 1992;89(5):1827–31.
Article
Google Scholar
Ganesan A, Arimondo PB, Rots MG, Jeronimo C, Berdasco M. The timeline of epigenetic drug discovery: from reality to dreams. Clin Epigenetics. 2019;11(1):174.
Article
Google Scholar
Gawehns F, Postuma M, van Gurp TP, Wagemaker CAM, Fatma S, Van Antro M, Mateman C, Milanovic-Ivanovic S, van Oers K, Große I. epiGBS2: an improved protocol and automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing. bioRxiv. 2020.
Geyer KK, Munshi SE, Vickers M, Squance M, Wilkinson TJ, Berrar D, Chaparro C, Swain MT, Hoffmann KF. The anti-fecundity effect of 5-azacytidine (5-AzaC) on Schistosoma mansoni is linked to dis-regulated transcription, translation and stem cell activities. Int J Parasitol Drugs Drug Resist. 2018;8(2):213–22. https://doi.org/10.1016/j.ijpddr.2018.03.006.
Article
PubMed
PubMed Central
Google Scholar
Geyer KK, Niazi UH, Duval D, Cosseau C, Tomlinson C, Chalmers IW, Swain MT, Cutress DJ, Bickham-Wright U, Munshi SE, Grunau C, Yoshino TP, Hoffmann KF. The Biomphalaria glabrata DNA methylation machinery displays spatial tissue expression, is differentially active in distinct snail populations and is modulated by interactions with Schistosoma mansoni. PLoS Negl Trop Dis. 2017;11(5): e0005246. https://doi.org/10.1371/journal.pntd.0005246.
Article
PubMed
PubMed Central
Google Scholar
Geyer KK, Rodríguez López CM, Chalmers IW, Munshi SE, Truscott M, Heald J, Wilkinson MJ, Hoffmann KF. Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni. Nat Commun. 2011;2:424. https://doi.org/10.1038/ncomms1433.
Article
PubMed
Google Scholar
Glastad KM, Hunt BG, Yi SV, Goodisman MA. DNA methylation in insects: on the brink of the epigenomic era. Insect Mol Biol. 2011;20(5):553–65. https://doi.org/10.1111/j.1365-2583.2011.01092.x.
Article
PubMed
Google Scholar
Gnyszka A, Jastrzebski Z, Flis S. DNA methyltransferase inhibitors and their emerging role in epigenetic therapy of cancer. Anticancer Res. 2013;33(8):2989–96.
PubMed
Google Scholar
Gowher H, Leismann O, Jeltsch A. DNA of Drosophila melanogaster contains 5-methylcytosine. EMBO J. 2000;19(24):6918–23. https://doi.org/10.1093/emboj/19.24.6918.
Article
PubMed
PubMed Central
Google Scholar
Gros C, Fahy J, Halby L, Dufau I, Erdmann A, Gregoire JM, Ausseil F, Vispé S, Arimondo PB. DNA methylation inhibitors in cancer: recent and future approaches. Biochimie. 2012;94(11):2280–96. https://doi.org/10.1016/j.biochi.2012.07.025.
Article
PubMed
Google Scholar
Grunau C, Clark SJ, Rosenthal A. Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucleic Acids Res. 2001;29(13):E65–75. https://doi.org/10.1093/nar/29.13.e65.
Article
PubMed
PubMed Central
Google Scholar
Halby L, Menon Y, Rilova E, Pechalrieu D, Masson V, Faux C, Bouhlel MA, David-Cordonnier MH, Novosad N, Aussagues Y, Samson A, Lacroix L, Ausseil F, Fleury L, Guianvarc’h D, Ferroud C, Arimondo PB. Rational Design of Bisubstrate-Type Analogues as Inhibitors of DNA Methyltransferases in Cancer Cells. J Med Chem. 2017;60(11):4665–79. https://doi.org/10.1021/acs.jmedchem.7b00176.
Article
PubMed
Google Scholar
Hendrich B, Tweedie S. The methyl-CpG binding domain and the evolving role of DNA methylation in animals. Trends Genet. 2003;19(5):269–77. https://doi.org/10.1016/S0168-9525(03)00080-5.
Article
PubMed
Google Scholar
Jablonka E, Lamb MJ. Epigenetic inheritance in evolution. J Evol Biol. 1998;11(2):159–83. https://doi.org/10.1046/j.1420-9101.1998.11020159.x.
Article
Google Scholar
Jablonka E, Lamb MJ. Epigenetic inheritance and evolution: the Lamarckian dimension. Oxford: Oxford University Press on Demand; 1999.
Google Scholar
Jiang M, Zhang Y, Fei J, Chang X, Fan W, Qian X, Zhang T, Lu D. Rapid quantification of DNA methylation by measuring relative peak heights in direct bisulfite-PCR sequencing traces. Lab Invest. 2010;90(2):282–90. https://doi.org/10.1038/labinvest.2009.132.
Article
PubMed
Google Scholar
Johannes F, Porcher E, Teixeira FK, Saliba-Colombani V, Simon M, Agier N, Bulski A, Albuisson J, Heredia F, Audigier P, Bouchez D, Dillmann C, Guerche P, Hospital F, Colot V. Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet. 2009;5(6): e1000530. https://doi.org/10.1371/journal.pgen.1000530.
Article
PubMed
PubMed Central
Google Scholar
Johnson KM, Kelly MW. Population epigenetic divergence exceeds genetic divergence in the Eastern oyster Crassostrea virginica in the Northern Gulf of Mexico. Evol Appl. 2020;13(5):945–59.
Article
Google Scholar
Jozefczuk J, James A. Quantitative real-time PCR-based analysis of gene expression. In: Methods in enzymology. Elsevier; 2011. p. 99–109.
Kanev I. Life-cycle, delimitation and redescription of Echinostoma revolutum (Froelich, 1802)(Trematoda: Echinostomatidae). Syst Parasitol. 1994;28(2):125–44.
Article
Google Scholar
Keller TE, Han P, Yi SV. Evolutionary Transition of Promoter and Gene Body DNA Methylation across Invertebrate-Vertebrate Boundary. Mol Biol Evol. 2016;33(4):1019–28. https://doi.org/10.1093/molbev/msv345.
Article
PubMed
Google Scholar
Knight M, Ittiprasert W, Arican-Goktas HD, Bridger JM. Epigenetic modulation, stress and plasticity in susceptibility of the snail host, Biomphalaria glabrata, to Schistosoma mansoni infection. Int J Parasitol. 2016;46(7):389–94. https://doi.org/10.1016/j.ijpara.2016.03.003.
Article
PubMed
Google Scholar
Krueger F. Trim Galore: a wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries. 2012. http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/. Accessed 28 Apr 2016.
Lee TF, Zhai J, Meyers BC. « Conservation and divergence in eukaryotic DNA methylation”. Proc Natl Acad Sci. 2010;107(20):9027–8.
Article
Google Scholar
Li E, Zhang Y. DNA methylation in mammals. Cold Spring Harb Perspect Biol. 2014;6(5): a019133. https://doi.org/10.1101/cshperspect.a019133.
Article
PubMed
PubMed Central
Google Scholar
Li LC, Dahiya R. MethPrimer: designing primers for methylation PCRs. Bioinformatics. 2002;18(11):1427–31. https://doi.org/10.1093/bioinformatics/18.11.1427.
Article
PubMed
Google Scholar
Lopez M, Halby L, Arimondo PB. DNA Methyltransferase Inhibitors: Development and Applications. Adv Exp Med Biol. 2016;945:431–73. https://doi.org/10.1007/978-3-319-43624-1_16.
Article
PubMed
Google Scholar
Luchtel D. Gonadal development and sex determination in pulmonate molluscs. I. Arion circumscriptus. Z Zellforsch Mikrosk Anat. 1972;130(3):279–301. https://doi.org/10.1007/bf00306943.
Article
PubMed
Google Scholar
Luviano N, Diaz-Palma S, Cosseau C, Grunau C. A simple Dot Blot Assay for population scale screening of DNA methylation. Biorxiv. 2018. https://doi.org/10.1101/454439.
Article
Google Scholar
Maharajan P, Maharajan V, Branno M, Scarano E. Effects of 5 azacytidine on DNA methylation and early development of sea urchins and ascidia. Differentiation. 1986;32(3):200–7.
Article
Google Scholar
McManus DP. Defeating Schistosomiasis. N Engl J Med. 2019;381(26):2567–8. https://doi.org/10.1056/NEJMe1913771.
Article
PubMed
Google Scholar
Meng H, Cao Y, Qin J, Song X, Zhang Q, Shi Y, Cao L. DNA methylation, its mediators and genome integrity. Int J Biol Sci. 2015;11(5):604–17. https://doi.org/10.7150/ijbs.11218.
Article
PubMed
PubMed Central
Google Scholar
Meröndun J, Murray DL, Shafer ABA. Genome-scale sampling suggests cryptic epigenetic structuring and insular divergence in Canada lynx. Mol Ecol. 2019;28(13):3186–96. https://doi.org/10.1111/mec.15131.
Article
PubMed
Google Scholar
Moore LD, Le T, Fan G. DNA methylation and its basic function. Neuropsychopharmacology. 2013;38(1):23–38. https://doi.org/10.1038/npp.2012.112.
Article
PubMed
Google Scholar
Müller R, Charaf S, Scherer C, Oppold A, Oehlmann J, Wagner M. Phenotypic and epigenetic effects of vinclozolin in the gastropod Physella acuta. J Molluscan Studies. 2016;82(2):320–7. https://doi.org/10.1093/mollus/eyv069.
Article
Google Scholar
Nicoglou A, Merlin F. Epigenetics: A way to bridge the gap between biological fields. Stud Hist Philos Biol Biomed Sci. 2017;66:73–82. https://doi.org/10.1016/j.shpsc.2017.10.002.
Article
PubMed
Google Scholar
Pechalrieu D, Etievant C, Arimondo PB. DNA methyltransferase inhibitors in cancer: From pharmacology to translational studies. Biochem Pharmacol. 2017;129:1–13. https://doi.org/10.1016/j.bcp.2016.12.004.
Article
PubMed
Google Scholar
Pechalrieu D, Dauzonne D, Arimondo PB, Lopez M. Synthesis of novel 3-halo-3-nitroflavanones and their activities as DNA methyltransferase inhibitors in cancer cells. Eur J Med Chem. 2020;186: 111829. https://doi.org/10.1016/j.ejmech.2019.111829.
Article
PubMed
Google Scholar
Prokopuk L, Hogg K, Western PS. Pharmacological inhibition of EZH2 disrupts the female germline epigenome. Clin Epigenetics. 2018;10:33. https://doi.org/10.1186/s13148-018-0465-4.
Article
PubMed
PubMed Central
Google Scholar
Reamon-Buettner SM, Mutschler V, Borlak J. The next innovation cycle in toxicogenomics: environmental epigenetics. Mutat Res. 2008;659(1–2):158–65. https://doi.org/10.1016/j.mrrev.2008.01.003.
Article
PubMed
Google Scholar
Rivière G. Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates. Front Physiol. 2014;5:129.
PubMed
PubMed Central
Google Scholar
Roberts SB, Gavery MR. Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates? Front Physiol. 2012;2:116. https://doi.org/10.3389/fphys.2011.00116.
Article
PubMed
PubMed Central
Google Scholar
Rondon R, Grunau C, Fallet M, Charlemagne N, Sussarellu R, Chaparro C, Montagnani C, Mitta G, Bachère E, Akcha F, Cosseau C. Effects of a parental exposure to diuron on Pacific oyster spat methylome. Environ Epigenet. 2017;3(1):004. https://doi.org/10.1093/eep/dvx004.
Article
Google Scholar
Sarda S, Zeng J, Hunt BG, Yi V, Soojin. The evolution of invertebrate gene body methylation. Mol Biol Evol. 2012;29(8):1907–16.
Article
Google Scholar
Schübeler D. Function and information content of DNA methylation. Nature. 2015;517(7534):321–6. https://doi.org/10.1038/nature14192.
Article
PubMed
Google Scholar
Seeland A, Albrand J, Oehlmann J, Müller R. Life stage-specific effects of the fungicide pyrimethanil and temperature on the snail Physella acuta (Draparnaud, 1805) disclose the pitfalls for the aquatic risk assessment under global climate change. Environ Pollut. 2013;174:1–9.
Article
Google Scholar
Sullivan J. Reversal of schistosome resistance in Biomphalaria glabrata by heat shock may be dependent on snail genotype. J Parasitol. 2018. https://doi.org/10.1645/17-110.
Article
PubMed
Google Scholar
Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet. 2008;9(6):465–76. https://doi.org/10.1038/nrg2341.
Article
PubMed
Google Scholar
Takiguchi M, Achanzar WE, Qu W, Li G, Waalkes MP. Effects of cadmium on DNA-(Cytosine-5) methyltransferase activity and DNA methylation status during cadmium-induced cellular transformation. Exp Cell Res. 2003;286(2):355–65.
Article
Google Scholar
Tan W, Zhou W, Yu HG, Luo HS, Shen L. The DNA methyltransferase inhibitor zebularine induces mitochondria-mediated apoptosis in gastric cancer cells in vitro and in vivo. Biochem Biophys Res Commun. 2013;430(1):250–5. https://doi.org/10.1016/j.bbrc.2012.10.143.
Article
PubMed
Google Scholar
Theron A, Rognon A, Gourbal B, Mitta G. Multi-parasite host susceptibility and multi-host parasite infectivity: a new approach of the Biomphalaria glabrata/Schistosoma mansoni compatibility polymorphism. Infect Genet Evol. 2014;26:80–8. https://doi.org/10.1016/j.meegid.2014.04.025.
Article
PubMed
Google Scholar
Thornhill JA, Jones JT, Kusel JR. Increased oviposition and growth in immature Biomphalaria glabrata after exposure to Schistosoma mansoni. Parasitology. 1986;93(Pt 3):443–50.
Article
Google Scholar
Tran H, Zhu H, Wu X, Kim G, Clarke CR, Larose H, Zhang L. Identification of Differentially Methylated Sites with Weak Methylation Effects. Genes. 2018;9(2):75.
Article
Google Scholar
Ueno M, Katayama K, Nakayama H, Doi K. Mechanisms of 5-azacytidine (5AzC)-induced toxicity in the rat foetal brain. Int J Exp Pathol. 2002;83(3):139–50. https://doi.org/10.1046/j.1365-2613.2002.00225.x.
Article
PubMed
PubMed Central
Google Scholar
van Gurp TP, Wagemaker NC, Wouters B, Vergeer P, Ouborg JN, Verhoeven KJ. epiGBS: reference-free reduced representation bisulfite sequencing. Nat Methods. 2016;13(4):322–4. https://doi.org/10.1038/nmeth.3763.
Article
PubMed
Google Scholar
Vinarski MV. The history of an invasion: phases of the explosive spread of the physid snail Physella acuta through Europe, Transcaucasia and Central Asia. Biol Invasions. 2017;19(4):1299–314.
Article
Google Scholar
Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schuebeler D. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet. 2005;37(8):853–62.
Article
Google Scholar
Western PS. Epigenomic drugs and the germline: Collateral damage in the home of heritability? Mol Cell Endocrinol. 2018;468:121–33. https://doi.org/10.1016/j.mce.2018.02.008.
Article
PubMed
Google Scholar
Xi Y, Li W. BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics. 2009;10:232. https://doi.org/10.1186/1471-2105-10-232.
Article
PubMed
PubMed Central
Google Scholar
Xiang H, Zhu J, Chen Q, Dai F, Li X, Li M, Zhang H, Zhang G, Li D, Dong Y, Zhao L, Lin Y, Cheng D, Yu J, Sun J, Zhou X, Ma K, He Y, Zhao Y, Guo S, Ye M, Guo G, Li Y, Li R, Zhang X, Ma L, Kristiansen K, Guo Q, Jiang J, Beck S, Xia Q, Wang W, Wang J. Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol. 2010;28(5):516–20. https://doi.org/10.1038/nbt.1626.
Article
PubMed
Google Scholar
Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. 2010;328(5980):916–9.
Article
Google Scholar
Zilberman D. The evolving functions of DNA methylation. Curr Opin Plant Biol. 2008;11(5):554–9. https://doi.org/10.1016/j.pbi.2008.07.004.
Article
PubMed
Google Scholar