Table 2 Mapping efficiencies, CpG coverage and average genome-wide methylation levels resulting from epiGBS and WGBS libraries
Samples | Mapping efficiency% | Sequence reads | Total no. CpGs | CpGs ≥ 8 × coverage | Methylated CpG sites | Methylated CpG% |
|---|---|---|---|---|---|---|
epiGBS F0 | 34.3 | 707 010 | 95 369 | 34 646 | 7 621 | 22.0 |
epiGBS F1 | 34.5 | 1 299 293 | 180 852 | 63 892 | 13 982 | 21.9 |
WGBS | 46.5 | 152 842 929 | 17 493 207 | 4 061 906 | 855 624 | 21.1 |