Volume 6 Supplement 1

Epigenetics and Chromatin: Interactions and processes

Meeting abstracts

Publication of this supplement was funded by BioMed Central.

Epigenetics and Chromatin: Interactions and processes. Go to conference site.

Boston, MA, USA11-13 March 2013

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Genome-wide multi-parametric analysis of H2AX or γH2AX distributions during ionizing radiation-induced DNA damage response

Authors: Francesco Natale, Alexander Rapp, Wei Yu, Marco Durante, Gisela Taucher-Scholz and Maria C Cardoso

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P58

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System-wide studies of the transcriptional programming of chromatin during early hematopoietic development

Authors: Nadine Obier, Mahalingam S Vijayabaskar, Stella Pearson, Maarten Hoogenkamp, Monika Lichtinger, Pierre Cauchy, David Westhead, Valerie Kouskoff, Georges Lacaud, Bertie Gottgens and Constanze Bonifer

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P59

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Methylation and hydroxymethylation of CpG display dynamic landscapes in early embryo development and define differentiation into embryonic and placental lineages

Authors: Yan Li and Chris O’Neill

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P60

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Developmental regulation of nucleoplasmin function by phosphorylation, glutamylation, and methylation

Authors: Takashi Onikubo, Joshua J Nicklav, Wei-Lin Wang, Jeffrey Shabanowitz, Donald F Hunt and David Shechter

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P61

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A prominent and conserved role for YY1 in Xist transcriptional activation

Authors: Jean-Francois Ouimette, Mélanie Makhlouf, Andrew Oldfield, Pablo Navarro and Claire Rougeulle

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P62

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Silencing subtelomeric VSGs by Trypanosoma brucei RAP1 at the insect stage involves chromatin structure changes

Authors: Unnati M Pandya, Ranjodh Sandhu and Bibo Li

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P63

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The 4-D landscape of the inflammatory response

Authors: Argyris Papantonis

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P64

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Nuclear envelope laminopathies: evidence for developmentally inappropriate chromatin-nuclear envelope interactions

Authors: Jelena Perovanovic, Jyoti Jaiswal, Nikola Markovic and Eric Hoffman

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P65

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MMSET dysregulates gene expression in myeloma through global and focal changes in H3K36 and H3K27 methylation

Authors: Relja Popovic, Eva Martinez-Garcia, Quanwei Zhang, Teresa Ezponda, Mrinal Y Shah, Yupeng Zhang, Yanwen Jiang, Christine M Will, Eliza C Small, Marinka Bulic, Olivier Elemento, Neil Kelleher, William Kath, Ji-Ping Wang and Jonathan D Licht

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P66

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Transcriptome dysregulation and epigenome signature responses in hepatocytes upon hepatitis B virus infection and therapy

Authors: Andreas Klein, Lisa Wiluhn, Theodor Winkler, Timo Deba, Valerie Orth, Kai Hensel, Andreas Jenke, Stefan Wirth and Jan Postberg

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P67

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Identification of a novel imprinting mechanism at the X-linked imprinted locus, X-linked Lymphocyte Regulated 3/4 (Xlr3/4)

Authors: Sohaib M Qureshi, Michael B Murphy, Seth Kasowitz, Robert J Foley and Michael J O’Neill

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P68

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Identifying candidate ncRNAs that direct changes in chromatin structure

Authors: Mridula K Ray, Yanqun Wang, Mark Borowsky, Ruslan Sadreyev and Robert E Kingston

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P69

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Polycomb/Trithorax group proteins collaborate with Heterochromatin protein 1 to regulate Drosophila sex determination

Authors: Janel Rodriguez and Jamila I Horabin

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P70

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Spatial organization and nuclear positioning of murine immunoglobulin loci in developing B cells

Authors: Magdalena B Rother, Kevin AM van Kester, Jacgues JM van Dongen, Cornells Murre and Menno C van Zelm

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P71

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P72

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P73

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Developmental regulation of histone H2A deposition via serine-1 phosphorylation

Authors: Wei-Lin Wang, Joshua J Nicklay, Lissa Anderson, Joe Strukl, Takashi Onikubo, Jeffrey Shabanowitz, Donald F Hunt and David Shechter

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P74

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Genome-wide analysis reveals TET-and TDG-mediated 5-methylcytosine oxidation dynamics

Authors: Li Shen, Hao Wu, Dinh Diep, Ana C D’Alessio, Alan Fung, Kun Zhang and Yi Zhang

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P75

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Profiling the impact of the embryonic microenvironment through global transcriptomic and DNA methylome surveying

Authors: Habib A Shojaei Saadi, Dominic Gagné, Eric Fournier, Isabelle Laflamme, Marc-André Sirard and Claude Robert

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P76

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P77

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P78

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Disruption of CTCF at the miR-125b1 locus in gynecological cancers and breast cancer cell lines

Authors: Ernesto Soto-Reves, Fernanda Cisneros-Soberanis, Iliana Alcalá Moreno, Rodrigo Gonzaílez Barrios, David Cantú de León, Clementina Castro and Luis A Herrera

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P79

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P80

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DNA methylation markers for disease progression and survival in Barrett’s Esophagus

Authors: Marc Taenzer, Michael Quante, Magdalena Liebl and Roland M Schmid

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P81

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Creation of a novel imprinting locus

Authors: David Taylor, Chelsea Brideau, Warren Wu, Alex Wang and Paul Soloway

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P82

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P83

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P84

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P85

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Identification of regions in the HOX cluster that can confer repression in a Polycomb-dependent manner

Authors: Caroline J Woo, Peter V Kharchenko, Laurence Daheron, Peter J Park and Robert E Kingston

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P86

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P87

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Genome-wide analysis reveals TET-and TDG-mediated 5-methylcytosine oxidation dynamics

Authors: Li Shen, Hao Wu, Dinh Diep, Ana C D’Alessio, Alan Fung, Kun Zhang and Yi Zhang

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P88

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5mC and 5hmC dynamics during PGC reprogramming and role of Tet1 in female meiosis

Authors: Shinpei Yamaguchi, Kwonho Hong, Rui Liu, Li Shen, Azusa Inoue, Dinh Diep, Kun Zhang and Yi Zhang

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P89

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LncRNAs expression signatures of cadmium-induced malignant transformation of human bronchial epithelial cells revealed by microarray

Authors: Zhi-heng Zhou, Cai-xia Wang, Yi-xiong Lei, Hai-bai Liu and Min Wang

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P90

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Core promoter elements are not essential for transcription in mammals

Authors: Zohar S Barbash, Jocelvn D Weissman, Jie Mu and Dinah S Singer

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P91

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Mating type specific chromosome conformation in Saccharomyces cerevisiae

Authors: Jon-Matthew Belton, Davide Bau, Imen Lassardi, Kerstin Bystricky, Marc Marti-Renom and Job Dekker

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P92

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Phospho-dependent recruitment of NuA4 by MRX at DNA breaks regulates RPA dynamics during resection

Authors: Olivier Jobin-Robitaille, Pierre Billon, Rémi Buisson, Valérie Côté, Hengyao Niu, Nicolas Lacoste, Patrick Sung, Steve Kron, Jean-Yves Masson and Jacques Côté

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P93

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Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes

Authors: Juan Manuel Caravaca, Greg Donahue, Justin S Becker and Kenneth S Zaret

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P94

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Centromere-specific histone Cse4 by the chaperone Scm3

Authors: Uhn-Soo Cho and Stephen C Harrison

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P95

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P96

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P97

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P98

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Global control of DNA replication timing by the budding yeast telomere protein Rif1

Authors: Laure Lemmens, Stefano Mattarocci, Isabella Marcomini, Tianlai Shi, Cindy Follonier, Massimo Lopes, Nicolas Thomä and David Shore

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P99

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P100

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Abrogation of Brd4 cellular function contributes to the oncogenic mechanisms of translocation t(15;19)-associated carcinoma

Authors: Ranran Wang, Christine M Heifer and Jianxin You

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P101

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Genetic dissection of quantitative epigenomic variation in yeast

Authors: Anne-Laure Abraham, Muniyandi Nagarajan, Jean-Baptiste Veyrieras, Hélène Bottin, Lars Steinmetz and Gaël Yvert

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P102

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DNA methylation alone does not cause most cell-type selective transcription factor binding

Authors: Matthew T Maurano, Hao Wang, Anthony Shafer, Sam John and John A Stamatoyannopoulos

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P103

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P104

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Coordinated epigenetic regulation of Engrailed-1 by the chromatin remodelers Smarca1 and Smarca5 mediates cerebellar morphogenesis

Authors: Matias Alvarez-Saavedra, Pamela Lagali, Keqin Yan, Emile Hashem, Alan Mears, Yves De Repentigny, Valerie A Wallace, Rashmi Kothary, Tomas Stopka, Arthur I Skoultchi and David J Picketts

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P105

Content type: Poster presentation Published on: 8 April 2013
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Mithramycin interacts with core histones and modulates epigenetic modifications

Authors: Amrita Banerjee, Chandrima Das and Dipak Dasgupta

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P106

Content type: Poster presentation Published on: 8 April 2013
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Chromatin remodeling by the CHD7 protein is impaired by mutations that cause human developmental disorders

Authors: Karim Bouazoune and Robert E Kingston

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P107

Content type: Poster presentation Published on: 8 April 2013
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Epigenetics and Chromatin: Interactions and processes

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