Volume 6 Supplement 1

Epigenetics and Chromatin: Interactions and processes

Meeting abstracts

Publication of this supplement was funded by BioMed Central.

Epigenetics and Chromatin: Interactions and processes. Go to conference site.

Boston, MA, USA11-13 March 2013

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Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax

Authors: John R Bracht, David H Perlman and Laura F Landweber

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P8

Content type: Poster presentation Published on: 18 March 2013
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Genome-wide mapping of chromatin marks from 1,000 cells to study epigenetic reprogramming in primordial germ cells

Authors: Julie Brind’Amour, Sheng Liu, Mehdi Karimi, Aaron Bogutz and Matthew Lorincz

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P9

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Cigarette smoking induces small airway epithelial epigenetic changes with corresponding modulation of gene expression

Authors: Lauren J Buro-Auriemma, Neil R Hackett, Jacqueline Salit, Matthew S Walters, Yael Strulovici-Barel, Michelle R Staudt, Jennifer Fuller, Melisa WY Ho and Ronald G Crystal

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P10

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P11

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Set1 cooperates with CENP-B in genome organization and transcriptome regulation

Authors: David R Lorenz, Irina V Mikheyeva, Lauren Meyer, Peter Johansen, Anastasia Berg, Shiv IS Grewal and Hugh P Cam

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P12

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Control of androgen receptor action by a novel nuclear receptor binding motif in Bag-1L

Authors: Laura Cato, Katja Jehle, Antje Neeb, Andrew CB Cato and Myles Brown

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P13

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Pausing as a mechanism of nucleosome recovery

Authors: Han-Wen Chang, Olga I Kulaeva, Alexey Shaytan, M Kibanov, K Severinov, David J Clark and Vasily M Studitsky

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P14

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Gene specific overwriting of epigenetic signatures to modulate the expression of selected tumor-promoting genes in cancer

Authors: Fahimeh Falahi, Christian Huisman, Elisa Garcia Diaz, Hinke G Kazemier, Geke AP Hospers and Marianne G Rots

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P15

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P16

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Chromatin remodeling induced by histone deacetylase inhibitors (HDACis) in HeLa, NIH 3T3 and HepG2 cells

Authors: Marina B Felisbino, Maria SV Gatti, Giovana MB Veronezi, Wirla MSC Tamashiro and Maria LS Mello

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P17

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DNA methylation and gene expression patterns in breast cancer progression from in situ carcinoma to invasive carcinoma

Authors: Thomas Fleischer, Hege Edvardsen, Jovana Jovanovic, Nizar Touleimat, Anne-Lise Børresen-Dale, Jörg Tost and Vessela N Kristensen

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P18

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Imprinted Xlr3 (X-linked Lymphocyte Regulated 3) produces a meiosis specific protein implicated in sex chromosome gene regulation in mouse

Authors: Robert J Foley, Seth Kasowitz, Emily Clancy, Andrew Sadowski and Michael O’Neill

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P19

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Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immnoprecipitation (iChIP)

Authors: Toshitsugu Fujita and Hodaka Fujii

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P20

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Effects of hyperglycemia on the regulation and expression of the Apoe, Igfbp1 and Foxo1 genes and on nuclear phenotypes in HepG2 cells

Authors: Flávia G Ghiraldini and Maria Luiza S Mello

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P21

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Function of HP1 proteins as a component in kinetochore formation and its relation with chromosome instability

Authors: Rodrigo González-Barrios, Ernesto Soto-Reyes, Julia Medoza Perez, Alejandro Lopez-Saavedra, Clementina H Castro and Luis A Herrera

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P22

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P23

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The role of TRIM24 during prostate cancer progression

Authors: Anna C Groner and Myles Brown

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P24

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A closer look into DNase I hypersensitivity

Authors: Housheng Hansen He, Clifford A Meyer, Henry Long, X Shirley Liu and Myles Brown

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P25

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P26

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The ubiquitin hydrolase, USP22 contributes to 3’-end processing of JAK-STAT inducible genes

Authors: Edmond Chipumuro and Melissa A Henriksen

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P27

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P28

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Myoblast expansion defects leads to muscle growth delay and subsequent compensatory adaptation in adult Atrx cKO skeletal muscle

Authors: Michael S Huh, Keqin Yan, Tina Price O’Dea and David J Picketts

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P29

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Pioneer transcription factor FoxA is positioned on hypersensitive nucleosomes at active enhancers

Authors: Makiko Iwafuchi-Doi, Greg Donahue, Jason Watts, Isabel Cuesta and Kenneth S Zaret

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P30

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eNOS expression in umbilical cord arterial endothelial cells depends on placental perfusion and is triggered by adaptive chromatin signatures

Authors: Jan Postberg, Miriam Kanders, Valerie Orth, Stefan Wirth and Andreas Jenke

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P31

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Effect of cell separation on gene expression and DNA methylation profiles in intestinal epithelial cells

Authors: M Molitor, J Postberg, V Orth, M Zilbauer and AC Jenke

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P32

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Estrogen induced downregulation of gene expression and cell biological processes critical for genital tubercle formation via DNA methylation

Authors: Jia-Xin Jiang, Karen J Aitken, Tyler P Kirwan, Sevan Hopyan and Darius J Bägli

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P33

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Modulation of DNA methylation and phenotypic switching in Smooth Muscle Cells by the extracellular matrix microenvironment

Authors: Jia-Xin Jiang, Karen J Aitken, Tyler P Kirwan, Nicole D Zhang, Shuye Pu and Darius J Bägli

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P34

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P35

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Comparison of multiplexed reduced representation bisulfite sequencing (mRRBS) with the 450K Illumina Human BeadChip: from concordance to practical applications for methylomic profiling in epigenetic epidemiologic studies

Authors: Juan J Carmona, Benedetta Izzi, Allan C Just, Jitendra Barupal, Alexandra M Binder, John Hutchinson, Oliver Hofmann, Joel Schwartz, Andrea Baccarelli and Karin B Michels

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P36

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Understanding histone-DNA interactions in the common bean (Phaseolus vulgaris L.)

Authors: Venu (Kal) Kalavacharla

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P37

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Deciphering the evolutionary origin of the RB1 imprint

Authors: Deniz Kanber, Christian Roos, Jörg Gromoll, Bernhard Horsthemke, Dietmar Lohmann and Karin Buiting

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P38

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P39

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P40

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Role of Ldb1 in the transition from chromatin looping to transcription activation

Authors: Ivan Krivega and Ann Dean

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P41

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Cellular and molecular mechanisms of neuronal loss in Atrx-knockout mice

Authors: Pamela S Lagali, Chantal F Medina, Keqin Yan, Alan J Mears, Valerie A Wallace and David J Picketts

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P42

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Identifying genomic features by BLASTing through chromatin

Authors: William KM Lai and Michael J Buck

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P43

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Abstract not submitted for online publication

Authors: Chi-Hua Lee

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P44

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Sex-specific chromatin states in mammalian fetal germ cells

Authors: Bluma J Lesch and David C Page

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P45

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Pre-mRNA splicing is a determinant of nucleosome organization

Authors: Hadas Keren-Shaul, Galit Lev-Maor and Gil Ast

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P46

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P47

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P48

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Elucidating the mechanisms underlying GATA-1 activity

Authors: Roland Gamsjaeger, Ana Silva, Nicholas Shepherd, Lorna Wilkinson-White, Ernest Laue, Gerd Blobel, Jacgui Matthews and Joel Mackav

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P49

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Integrated analyses of chromatin accessibility and gene expression data for elucidating the transcriptional regulatory mechanisms during early hematopoietic development in mouse

Authors: Mahalingam S Viiavabaskar, Nadine Obier, Stella Pearson, Maarten Hoogenkamp, Monika Lichtinger, Georges Lacaud, Valerie Kouskoff, Bertie Gottgens, Constanze Bonifer and David R Westhead

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P50

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Control of antigen receptor gene assembly by cis-element mediated looping

Authors: Kinjal Majumder, Olivia Koues, Suhasni Gopalakrishnan, Oleg Osipovich, Yue Huang and Eugene Oltz

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P51

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MeCP2 binds to 5hmc enriched within active genes and accessible chromatin in the nervous system

Authors: Marian Mellen, Pinar Ayata, Scott Dewell, Skirmantas Kriaucionis and Nathaniel Heintz

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P52

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Genome-wide analysis of promoter and enhancer usage in hematopoietic stem cell differentiation

Authors: Annarita Miccio, Clelia Peano, Oriana Romano, Guidantonio Tagliazucchi, Luca Petiti, Ingrid Cifola, Ermanno Rizzi, Marco Severgnini, Silvio Bicciato, Gianluca De Bellis and Fulvio Mavilio

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P53

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The H19 locus: regulatory function of an imprinted non coding RNA in embryonic development

Authors: Paul Monnier, Clémence Martinet and Luisa Dandolo

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P54

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To be or not to be a Queen: the dark side of the ant genome

Authors: Claire Morandin, Yutaka Watanabe, Misato Okamoto, Man Ying Tin and Alexander Sasha Mikheyev

Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P55

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P56

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Citation: Epigenetics & Chromatin 2013 6(Suppl 1):P57

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Epigenetics and Chromatin: Interactions and processes

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