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Table 5 GO biological process terms and genes that were enriched among differentially expressed genes in ventricles from juvenile snapping turtles

From: Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle

locus_number (in snapping turtle) gene_name gene_symbol
Sarcomere organization
 CS000009788 Bone morphogenetic protein 10 BMP10
 CS000018274 Cysteine and glycine rich protein 1 CSRP1
 CS000002632 Cysteine and glycine rich protein 3 CSRP3
 CS000023885 Formin homology 2 domain containing 3 FHOD3
 CS000019220 Keratin 8 KRT8
 CS000005252 Myomesin 3 MYOM3
 CS000000499 Myopalladin MYPN
 CS000000944 Troponin T2, cardiac type TNNT2
Cell adhesion = biological adhesion
 CS000007175 Adhesion G protein-coupled receptor L3 ADGRL3
 CS000009633 Activated leukocyte cell adhesion molecule ALCAM
 CS000004780 Amyloid beta precursor protein-binding family A member 1 APBA1
 CS000009788 Bone morphogenetic protein 10 BMP10
 CS000003073 Cadherin 11, type 2, OB-cadherin (osteoblast) CDH11
 CS000003093 Cadherin 13 CDH13
 CS000014745 Cadherin EGF LAG seven-pass G-type receptor 3 celsr3
 CS000008605 Contactin associated protein 1 CNTNAP1
 CS000002886 Collagen type XV alpha 1 chain COL15A1
 CS000014058 Collagen, type XVIII, alpha 1 COL18A1
 CS000004853 Collagen type III alpha 1 chain COL3A1
 CS000025399 Collagen type IV alpha 6 chain COL4A6
 CS000009656 Collagen type VIII alpha 1 chain COL8A1
 CS000018274 Cysteine and glycine rich protein 1 CSRP1
 CS000007341 Catenin delta 1 CTNND1
 CS000021606 Ependymin related 1 EPDR1
 CS000003405 Fibronectin 1 FN1
 CS000001877 Glycoprotein nmb GPNMB
 CS000018642 Hyaluronan-binding protein 2 HABP2
 CS000007378 Heat shock protein family B (small) member 1 HSPB1
 CS000012953 Immunoglobulin superfamily containing leucine-rich repeat ISLR
 CS000008411 Integrin subunit alpha 11 ITGA11
 CS000009567 Keratin 18 KRT18
 CS000017005 Muskelin 1 MKLN1
 CS000020271 Myosin, light chain 12A, regulatory, non-sarcomeric MYL12A
 CS000000499 myopalladin MYPN
 CS000008885 Neural precursor cell expressed, developmentally down-regulated 9 NEDD9
 CS000018597 Neurexin 2 NRXN2
 CS000002394 Neurotrimin NTM
 CS000019311 Protein kinase C alpha PRKCA
 CS000011090 Secreted phosphoprotein 1 SPP1
 CS000020166 Tweety family member 1 TTYH1
 CS000020993 TYRO3 protein tyrosine kinase TYRO3
Signal transduction
 CS000017075 Adhesion G protein-coupled receptor D2 ADGRD2
 CS000009646 Adhesion G protein-coupled receptor G7 ADGRG7
 CS000007175 Adhesion G protein-coupled receptor L3 ADGRL3
 CS000003393 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 AGAP1
 CS000009633 Activated leukocyte cell adhesion molecule ALCAM
 CS000011198 Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 APPL1
 CS000002385 Rho GTPase-activating protein 32 ARHGAP32
 CS000021833 Rho GTPase activating protein 45 ARHGAP45
 CS000023302 Cdc42 guanine nucleotide exchange factor 9 ARHGEF9
 CS000003395 Ankyrin repeat and SOCS box containing 18 ASB18
 CS000001723 ATM serine/threonine kinase ATM
 CS000013883 BCL tumor suppressor 7B BCL7B
 CS000009788 Bone morphogenetic protein 10 BMP10
 CS000004917 Bone morphogenetic protein receptor type 2 BMPR2
 CS000014425 B-Raf proto-oncogene, serine/threonine kinase BRAF
 CS000009112 Calcium-binding protein 5 CABP5
 CS000023033 Calcitonin receptor CALCR
 CS000004923 CD28 molecule CD28
 CS000003093 Cadherin 13 CDH13
 CS000014745 Cadherin EGF LAG seven-pass G-type receptor 3 celsr3
 CS000006114 chordin like 1 CHRDL1
 CS000008605 Contactin associated protein 1 CNTNAP1
 CS000002886 Collagen type XV alpha 1 chain COL15A1
 CS000004853 Collagen type III alpha 1 chain COL3A1
 CS000025399 Collagen type IV alpha 6 chain COL4A6
 CS000009979 Cysteine rich transmembrane BMP regulator 1 CRIM1
 CS000011960 Crystallin alpha B CRYAB
 CS000002632 Cysteine and glycine rich protein 3 CSRP3
 CS000007341 Catenin delta 1 CTNND1
 CS000003128 Cytochrome b-245 alpha chain CYBA
 CS000005867 Epidermal growth factor receptor pathway substrate 8 EPS8
 CS000008545 Erb-b2 receptor tyrosine kinase 2 ERBB2
 CS000012011 Coagulation factor III, tissue factor F3
 CS000002168 Fibroblast growth factor receptor 3 FGFR3
 CS000003405 Fibronectin 1 FN1
 CS000002902 Gamma-aminobutyric acid type B receptor subunit 1 GABBR1
 CS000008168 Glucagon GCG
 CS000005687 G protein subunit alpha 12 GNA12
 CS000013318 G protein subunit gamma 10 GNG10
 CS000001877 Glycoprotein nmb GPNMB
 CS000017383 G protein-coupled receptor 62 GPR62
 CS000008476 Growth factor receptor bound protein 10 GRB10
 CS000008544 Growth factor receptor bound protein 7 GRB7
 CS000006655 G protein-coupled receptor kinase 3 GRK3
 CS000020555 Granzyme H GZMH
 CS000023516 Hypoxia inducible factor 1 alpha subunit HIF1A
 CS000007378 Heat shock protein family B (small) member 1 HSPB1
 CS000000714 Interleukin 22 IL22
 CS000008411 Integrin subunit alpha 11 ITGA11
 CS000005400 Inositol-trisphosphate 3-kinase A ITPKA
 CS000009858 Arginine demethylase and lysine hydroxylase JMJD6
 CS000020495 Kinase non-catalytic C-lobe domain containing 1 KNDC1
 CS000009567 Keratin 18 KRT18
 CS000019220 Keratin 8 KRT8
 CS000015494 Limb development membrane protein 1 LMBR1
 CS000008774 Mitogen-activated protein kinase kinase kinase 5 MAP3K5
 CS000003679 Mitogen-activated protein kinase 9 MAPK9
 CS000001243 Myelin basic protein MBP
 CS000023152 Mindbomb E3 ubiquitin protein ligase 1 MIB1
 CS000017005 Muskelin 1 MKLN1
 CS000014226 MOB kinase activator 1B MOB1B
 CS000012971 Neuron derived neurotrophic factor NDNF
 CS000008885 Neural precursor cell expressed, developmentally down-regulated 9 NEDD9
 CS000001770 Neuroepithelial cell transforming 1 NET1
 CS000000790 NFKB inhibitor like 1 NFKBIL1
 CS000018597 Neurexin 2 NRXN2
 CS000014447 PDZ-binding kinase PBK
 CS000003989 Pleckstrin homology domain interacting protein PHIP
 CS000000947 Pleckstrin homology-like domain family A member 3 PHLDA3
 CS000010015 Proteolipid protein 1 PLP1
 CS000000163 DNA polymerase kappa POLK
 CS000025418 Peptidylprolyl isomerase A PPIA
 CS000008337 Protein phosphatase, Mg2+/Mn2+-dependent 1L PPM1L
 CS000000189 Protein kinase AMP-activated non-catalytic subunit beta 2 PRKAB2
 CS000019311 Protein kinase C alpha PRKCA
 CS000012528 Persephin PSPN
 CS000009267 RAB32, member RAS oncogene family RAB32
 CS000004444 RAB33A, member RAS oncogene family RAB33A
 CS000007756 Raf-1 proto-oncogene, serine/threonine kinase RAF1
 CS000001871 Rap guanine nucleotide exchange factor 5 RAPGEF5
 CS000015645 Regulator of cell cycle RGCC
 CS000020112 Ral guanine nucleotide dissociation stimulator-like 2 RGL2
 CS000023359 Ral guanine nucleotide dissociation stimulator like 3 RGL3
 CS000008982 Regulator of G-protein signaling 5 RGS5
 CS000009817 Rho related BTB domain containing 2 RHOBTB2
 CS000011866 Ras homolog family member C RHOC
 CS000000565 Ras and Rab interactor-like protein RINL
 CS000012325 Receptor interacting serine/threonine kinase 2 RIPK2
 CS000012890 Sestrin 3 SESN3
 CS000021605 Secreted frizzled related protein 4 SFRP4
 CS000018595 Signal-induced proliferation-associated 1 SIPA1
 CS000005505 SIVA1 apoptosis inducing factor SIVA1
 CS000012858 Suppressor of cytokine signaling 2 SOCS2
 CS000023280 Sorbin and SH3 domain containing 2 SORBS2
 CS000006802 Sortilin related VPS10 domain containing receptor 1 SORCS1
 CS000020596 Sortilin related VPS10 domain containing receptor 2 SORCS2
 CS000011090 Secreted phosphoprotein 1 SPP1
 CS000021122 Sprouty related EVH1 domain containing 2 SPRED2
 CS000003610 Serine/threonine kinase 32A STK32A
 CS000024894 Serine/threonine kinase 38 like STK38L
 CS000024997 Toll like receptor 6 TLR6
 CS000015148 Tumor necrosis factor superfamily member 10 TNFSF10
 CS000011024 Target of myb1 like 1 membrane trafficking protein TOM1L1
 CS000019856 TNF receptor associated factor 2 TRAF2
 CS000012224 TNF receptor associated factor 3 TRAF3
 CS000018042 Tribbles pseudokinase 1 TRIB1
 CS000002912 Tripartite motif containing 21 TRIM21
 CS000005987 Tyrosine kinase 2 TYK2
 CS000020993 TYRO3 protein tyrosine kinase TYRO3
 CS000017504 unc-5 netrin receptor A UNC5A
 CS000002566 VAMP associated protein B and C VAPB
 CS000025210 Wnt family member 11 WNT11
 CS000014907 Zinc finger protein 219 ZNF219
 CS000002650 Doublecortin domain containing 1  
 CS000013923 Uncharacterized  
 CS000014046 G protein-coupled receptor kinase 5-like  
 CS000019987 Plexin A3  
 CS000025011 Retinoic acid receptor, alpha  
  1. Gene names and gene symbols are listed for each enriched GO term. Genes in the biological adhesion and cell adhesion lists were identical, because these are parent and child terms. GO terms were considered significant when FDR corrected p ≤ 0.05