Fig. 2

FfH2A.Z occupancy and nucleosome localization in F. fujikuroi (FfWT). (A) Nucleosome map of all genes in FfWT (1,636 gene regions). Gene regions (1 kilobase pair (kbp) to 5 kbp flanking the + 1-nucleosomes) are sorted by increasing gene length from top to bottom, arrows on the top and on the bottom indicate the position of the + 1-nucleosome and the nucleosome depleted regions, respectively. (B) Genes are in the same order as in A, the heatmap shows FfH2A.Z occupancy concerning the + 1-nucleosome. CPM; counts per million reads not log2 scaled, NDR; nucleosome-depleted region, bp; base pair. (C) Density plot of FfH2A.Z occupancy over the − 1-, + 1-, + 1-nucleosomes from bidirectional promoters and all other nucleosomes. The threshold was determined based on the height of all genome-wide detectable peaks falling into a 95% quantile. CPM; counts per million reads