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Fig. 3 | Epigenetics & Chromatin

Fig. 3

From: Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C

Fig. 3

Chromatin loops near structural variants. A Numbers of inter- and intra-chromosomal structural variants identified from Hi-C and Micro-C data are shown. B Numbers of each category of structural variants identified from Hi-C and Micro-C data are shown. C Numbers of loops identified around the structural variants from Hi-C and Micro-C data are shown at 5 kb and 10 kb resolutions. D Numbers of neoloops (loops newly gained due to the structural variants) that are shared (between any datasets) or unique among Hi-C 1 billion, Micro-C 1 billion, 2 billion and 3 billion data are shown. E An example heatmap of Micro-C data near the ARID1A gene that includes inversion structural variant is shown on the top. Under the heatmap, RNA-seq and RefSeq gene tracks are shown. Example neoloops newly gained due to the structural variants are circled in blue

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Epigenetics & Chromatin

ISSN: 1756-8935