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Table 1 Details on bisulfite amplicons screened in the study

From: Identification of tissue-specific and common methylation quantitative trait loci in healthy individuals using MAGAR

Gene locus chr SNP position
ID
PCR primers (5′–3′)a CpG ID MethQTL distance (bp) MethQTL deltab
EPIC, NGS
PON1 7 94,953,895
rs705379
TCTTTCCCTACACGACGCTCTTCCGATCTgattggtggtttttgaagagtgttagtttt
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTccataatcaaactactaaatctctctaaaac
cg01874867, cg20119798 164
249
+ 14.9%, + 39.7%
ZNF155 19 44,488,352
rs62116613
TCTTTCCCTACACGACGCTCTTCCGATCTggttgataggttagaatttataggttt
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTcacatacttaactcaaaccacctt
cg23456212, cg20451226 182
171
+ 7.8%, + 13.3%
NRG2 5 139,340,779
rs6580323
TCTTTCCCTACACGACGCTCTTCCGATCTtttatgaattttgaagaagttgttaggt
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTcacatacaaaactaaaacctaaatcc
cg22710094 85 − 5.1%, − 20.1%
  1. aCapital letters are NGS-compatible tags
  2. bAbsolute methylation change of homozygote minor versus major individuals