Fig. 4
From: Integrative prediction of gene expression with chromatin accessibility and conformation data
Model performance measured in Spearman correlation on hold-out test data considering chromatin contacts derived from a HiC data using two different search windows (25Â kb and 50Â kb) as well as b using HiChIP data. We considered two different promoter windows, a 3 kb and a 50 kb window. While for HiC, the 50 kb promoter windows led to better models than the 3 kb models, it is the other way around considering HiChIP data. Significance is assessed using a Wilcoxon test using the promoter model as the reference group (\(p <0.0001\), **\(p <0.01\), *\(p <0.05\), ns: \(p \ge 0.05\))