DAMEfinder: a method to detect differential allele-specific methylation

Table 2 Colorectal cancer sample characteristics

Sample ID^a	CIMP status	Sex	Number of mapped reads	Average coverage	Average coverage in probes
N1			76,801,310	3.025	78.06
C1	Non-CIMP	F	68,010,696	2.47	61.62
N2			74,815,980	2.97	69.96
C2	CIMP	M	62,122,636	2.47	63.16
N3			66,608,688	2.64	63.88
C3	Non-CIMP	M	57,828,284	2.28	57.52
N4			66,108,442	2.62	58.61
C4	CIMP	M	59,390,888	2.35	61.25
N5			70,070,214	2.56	59.0032
C5	Non-CIMP	M	68,575,884	2.50	49.98
N6			59,056,548	2.15	49.52
C6	CIMP	F	79,669,532	2.92	71.39

C CRC, N paired sample of normal mucosa, non-CIMP the mismatch repair gene MLH1 normally expressed, CIMP MLH1 silenced by promoter hypermethylation
^aSample ID changed from arrayexpress

ISSN: 1756-8935