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Table 2 Colorectal cancer sample characteristics

From: DAMEfinder: a method to detect differential allele-specific methylation

Sample IDa CIMP status Sex Number of mapped reads Average coverage Average coverage in probes
N1    76,801,310 3.025 78.06
C1 Non-CIMP F 68,010,696 2.47 61.62
N2    74,815,980 2.97 69.96
C2 CIMP M 62,122,636 2.47 63.16
N3    66,608,688 2.64 63.88
C3 Non-CIMP M 57,828,284 2.28 57.52
N4    66,108,442 2.62 58.61
C4 CIMP M 59,390,888 2.35 61.25
N5    70,070,214 2.56 59.0032
C5 Non-CIMP M 68,575,884 2.50 49.98
N6    59,056,548 2.15 49.52
C6 CIMP F 79,669,532 2.92 71.39
  1. C CRC, N paired sample of normal mucosa, non-CIMP the mismatch repair gene MLH1 normally expressed, CIMP MLH1 silenced by promoter hypermethylation
  2. aSample ID changed from arrayexpress