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Table 2 Colorectal cancer sample characteristics

From: DAMEfinder: a method to detect differential allele-specific methylation

Sample IDaCIMP statusSexNumber of mapped readsAverage coverageAverage coverage in probes
N1  76,801,3103.02578.06
C1Non-CIMPF68,010,6962.4761.62
N2  74,815,9802.9769.96
C2CIMPM62,122,6362.4763.16
N3  66,608,6882.6463.88
C3Non-CIMPM57,828,2842.2857.52
N4  66,108,4422.6258.61
C4CIMPM59,390,8882.3561.25
N5  70,070,2142.5659.0032
C5Non-CIMPM68,575,8842.5049.98
N6  59,056,5482.1549.52
C6CIMPF79,669,5322.9271.39
  1. C CRC, N paired sample of normal mucosa, non-CIMP the mismatch repair gene MLH1 normally expressed, CIMP MLH1 silenced by promoter hypermethylation
  2. aSample ID changed from arrayexpress