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Table 3 PCR conditions for the generation of FISH probes

From: DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements

PCRs

Alu (template)

Alu (labeling)

MaSat

PCR buffer*

1 ×

1 ×

1 ×

dATP/dGTP/dCTP

0.2 mM each

0.2 mM each

0.4 mM each

dTTP

0.2 mM

0.15 mM

–

dUTP-biotin

–

0.05 mM

0.08 mM

primer F/R

1 µM each

1 µM each

0.2 µM each

Taq polymerase

1.5 µL

1.5 µL

1 µL

DNA template

100 ng gDNA

1 µL 1:50 PCR product

100 ng gDNA

Final volume

to 50 µL

to 50 µL

to 50 µL

  1. * 10× PCR buffer: 100 mM Tris–HCl pH 8.3, 500 mM KCl, 15 mM MgCl2