Table 2 ENCODE datasets used for histone modifications and replication timing
From: DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements
Cell line | Dataset | |
|---|---|---|
HeLa-S3 | Repli-seq data | GSM923449 |
HeLa-S3 | H3K4me1 | GSM798322 |
HeLa-S3 | H3K4me2 | GSM733734 |
HeLa-S3 | H3K4me3 | GSM73368 |
HeLa-S3 | H3K36me3 | GSM733711 |
HeLa-S3 | H3K79me2 | GSM733669 |
HeLa-S3 | H3K9ac | GSM733756 |
HeLa-S3 | H3K27ac | GSM733684 |
HeLa-S3 | H3K27me3 | GSM733696 |
HeLa-S3 | H3K9me3 | GSM1003480 |
GM12878 | Repli-seq data | GSM923451 |
GM12878 | H3K4me1 | GSM733772 |
GM12878 | H3K4me2 | GSM733769 |
GM12878 | H3K4me3 | GSM733708 |
GM12878 | H3K36me3 | GSM733679 |
GM12878 | H3K79me2 | GSM733736 |
GM12878 | H3K9ac | GSM733677 |
GM12878 | H3K27ac | GSM733771 |
GM12878 | H3K27me3 | GSM733758 |
GM12878 | H3K9me3 | GSM733664 |
HepG2 | Repli-seq data | GSM923446 |
HepG2 | H3K4me1 | GSM798321 |
HepG2 | H3K4me2 | GSM733693 |
HepG2 | H3K4me3 | GSM733737 |
HepG2 | H3K36me3 | GSM733685 |
HepG2 | H3K79me2 | GSM733641 |
HepG2 | H3K9ac | GSM733638 |
HepG2 | H3K27ac | GSM733743 |
HepG2 | H3K27me3 | GSM733754 |
HepG2 | H3K9me3 | GSM1003519 |