(A) CTCF; HMEC–HUVEC
|
AA
|
AB
|
BA
|
BB
|
Total
|
R
|
p value
|
---|
HMEC only CTCF BSs
|
7241
|
1655
|
947
|
4775
|
14,618
|
2.34
|
10−168
|
HUVEC only CTCF BSs
|
4516
|
264
|
1180
|
1524
|
7484
| | |
Common CTCF BSs
|
24,986
|
2587
|
4647
|
9750
|
41,970
| | |
(B) H3K9ac; GM12878-NHEK
|
AA
|
AB
|
BA
|
BB
|
Total
|
R
|
p value
|
---|
GM12878 only H3K9ac peaks
|
14,695
|
3111
|
596
|
1708
|
20,110
|
4.54
|
< 10−300
|
NHEK only H3K9ac peaks
|
19,997
|
1401
|
5949
|
4154
|
31,501
| | |
Common H3K9ac peaks
|
21,594
|
2036
|
1078
|
2911
|
27,619
| | |
(C) H3K27me3; MCF7-GM12878
|
AA
|
AB
|
BA
|
BB
|
Total
|
R
|
p value
|
---|
MCF7 only H3K27me3 peaks
|
5213
|
1751
|
3637
|
9712
|
20,313
|
0.54
|
10−122
|
GM12878 only H3K27me3 peaks
|
7176
|
1765
|
1145
|
3608
|
13,694
| | |
Common H3K27me3 peaks
|
318
|
95
|
118
|
317
|
848
| | |
- Preference to cell-type specific A/B compartment is emphasized in italics