Table 5 SPOT score for ChIP-seq datasets from GM12878 (A) and mouse ES cells (B)
Epitope | Dataset | SPOT score (%) |
|---|---|---|
(A) SPOT scores for GM12878 monoclonal and polyclonal datasets | ||
H3K27ac | Monoclonal Rep 1 | 37.42 |
Monoclonal Rep 2 | 38.86 | |
Polyclonal ENCFF000ASP | 45.34 | |
Polyclonal ENCFF000ASU | 19.41 | |
H3K27me3 | Monoclonal Rep 1 | 45.67 |
Monoclonal Rep 2 | 47.53 | |
Polyclonal ENCFF000ASV | 40.92 | |
Polyclonal ENCFF000ASW | 48.89 | |
Polyclonal ENCFF000ASZ | 24.35 | |
H3K4me1 | Monoclonal Rep 1 | 27.84 |
Monoclonal Rep 2 | 25.66 | |
Polyclonal ENCFF000ASM | 45.47 | |
Polyclonal ENCFF000ATK | 33.47 | |
H3K4me3 | Monoclonal Lot 8 Rep 1 | 65.41 |
Monoclonal Lot 8 Rep 2 | 67.41 | |
Monoclonal Lot 9 Rep 1 | 62.18 | |
Monoclonal Lot 9 Rep 2 | 58.64 | |
Polyclonal ENCFF000ASR | 27.53 | |
Polyclonal ENCFF000AUB | 16.47 | |
H3K9me3 | Monoclonal K9me3 Rep 1 | 25.24 |
Monoclonal K9me3 Rep 2 | 24.76 | |
Polyclonal ENCFF000AUK | 25.50 | |
Polyclonal ENCFF000AUO | 28.59 | |
(B) SPOT scores for mouse ES cells monoclonal and polyclonal datasets | ||
H2K27ac | Monoclonal Rep1 | 11 |
Monoclonal Rep2 | 11 | |
Polyclonal Mouse ENCODE Bruce4 Rep 1 | 16 | |
Polyclonal Mouse ENCODE Bruce4 Rep 2 | 14 | |
Polyclonal Mouse ENCODE E14 Rep 1 | 6 | |
Polyclonal Mouse ENCODE E14 Rep 2 | 16 | |
H3K27me3 | Monoclonal Lot 1 Rep1 | 3 |
Monoclonal Lot 1 Rep2 | 3 | |
Polyclonal Mouse ENCODE Bruce4 Rep 1 | 4 | |
Polyclonal Mouse ENCODE Bruce4 Rep 2 | 4 | |
H3K4me1 | Monoclonal Rep 1 | 16 |
Monoclonal Rep 2 | 15 | |
Polyclonal Mouse ENCODE Bruce4 | 30 | |
Polyclonal Mouse ENCODE E14 Rep 1 | 24 | |
Polyclonal Mouse ENCODE E14 Rep 2 | 27 | |
H3K4me3 | Monoclonal Lot 8 Rep 1 | 33 |
Monoclonal Lot 8 Rep 2 | 27 | |
Monoclonal Lot 9 Rep 1 | 30 | |
Monoclonal Lot 9 Rep 2 | 27 | |
Polyclonal Mouse ENCODE Bruce4 Rep 1 | 36 | |
Polyclonal Mouse ENCODE Bruce4 Rep 2 | 37 | |
Polyclonal Mouse ENCODE E14 Rep 1 | 42 | |
Polyclonal Mouse ENCODE E14 Rep 2 | 39 | |
H3K9me3 | Monoclonal Rep1 | 3 |
Monoclonal Rep2 | 3 | |
Polyclonal Mouse ENCODE Bruce4 Rep 1 | 11 | |
Polyclonal Mouse ENCODE Bruce4 Rep 2 | 12 | |