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Table 4 Comparison of the percentage of reads in their expected ENCODE canonical regions (as defined in Table 2) between ChIP-seq datasets derived obtained by monoclonal and polyclonal antibodies

From: Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq

  Percent reads in expected regions (%) Enrichment over WCE
H3K27ac
MonoRep1 60.5 15.2
MonoRep2 56.1 14.1
PolyRep1 56.8 14.2
PolyRep2 56.3 14.1
H3K27me3
MonoRep1 86.1 1.1
MonoRep2 86.1 1.1
MonoRep3 86.2 1.1
MonoRep4 86.2 1.1
PolyRep1 86.6 1.1
PolyRep2 86.3 1.1
PolyRep3 87.1 1.1
H3K4me1
MonoRep1 7.2 4.2
MonoRep2 9.6 5.6
MonoRep3 8.2 4.8
PolyRep1 9.9 5.8
PolyRep2 9.9 5.7
H3K4me3
MonoRep1 26.5 11.7
MonoRep2 29.4 13.0
MonoRep3 29.2 12.9
MonoRep4 28.2 12.4
PolyRep1 35.6 15.7
PolyRep2 34.4 15.2
PolyRep3 33.6 14.8
PolyRep4 32.4 14.3
H3K9me3
MonoRep1 84.9 1.1
MonoRep2 84.7 1.1
MonoRep3 84.8 1.1
PolyRep1 86.0 1.1
PolyRep2 85.4 1.1
  1. Enrichment versus WCE is defined as the percentage of reads in that region type in the sample divided by the percentage of reads in that region type in the WCE control