Table 4 Comparison of the percentage of reads in their expected ENCODE canonical regions (as defined in Table 2) between ChIP-seq datasets derived obtained by monoclonal and polyclonal antibodies
| Â | Percent reads in expected regions (%) | Enrichment over WCE |
|---|---|---|
H3K27ac | ||
MonoRep1 | 60.5 | 15.2 |
MonoRep2 | 56.1 | 14.1 |
PolyRep1 | 56.8 | 14.2 |
PolyRep2 | 56.3 | 14.1 |
H3K27me3 | ||
MonoRep1 | 86.1 | 1.1 |
MonoRep2 | 86.1 | 1.1 |
MonoRep3 | 86.2 | 1.1 |
MonoRep4 | 86.2 | 1.1 |
PolyRep1 | 86.6 | 1.1 |
PolyRep2 | 86.3 | 1.1 |
PolyRep3 | 87.1 | 1.1 |
H3K4me1 | ||
MonoRep1 | 7.2 | 4.2 |
MonoRep2 | 9.6 | 5.6 |
MonoRep3 | 8.2 | 4.8 |
PolyRep1 | 9.9 | 5.8 |
PolyRep2 | 9.9 | 5.7 |
H3K4me3 | ||
MonoRep1 | 26.5 | 11.7 |
MonoRep2 | 29.4 | 13.0 |
MonoRep3 | 29.2 | 12.9 |
MonoRep4 | 28.2 | 12.4 |
PolyRep1 | 35.6 | 15.7 |
PolyRep2 | 34.4 | 15.2 |
PolyRep3 | 33.6 | 14.8 |
PolyRep4 | 32.4 | 14.3 |
H3K9me3 | ||
MonoRep1 | 84.9 | 1.1 |
MonoRep2 | 84.7 | 1.1 |
MonoRep3 | 84.8 | 1.1 |
PolyRep1 | 86.0 | 1.1 |
PolyRep2 | 85.4 | 1.1 |