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Table 1 Top 30 most hypomethylated CpG sites in naïve CD4+ T cells from healthy African-Americans compared to European Americans

From: Ethnicity-specific epigenetic variation in naïve CD4+ T cells and the susceptibility to autoimmunity

CpG site

Associated gene

African-American average β

European-American average β

Δβ

P value

Location (chromosome: HG19 position)

cg26069044

NRGN

0.32

0.73

−0.41

1.82E−05

11:124613956

cg19651115

 

0.33

0.71

−0.37

1.20E−10

12:11700343

cg18232235

 

0.54

0.88

−0.34

3.61E−07

12:11700321

cg15131258

C20orf71

0.38

0.69

−0.31

5.45E−10

20:31805182

cg11738485

HOOK2

0.15

0.45

−0.31

8.55E−03

19:12877000

cg22068400

 

0.22

0.52

−0.31

9.56E−07

2:90016264

cg04193820

RNF135

0.17

0.46

−0.30

5.48E−12

17:29297414

cg08896939

RNF135

0.20

0.49

−0.29

2.15E−10

17:29297380

cg27436995

FBXL16

0.36

0.64

−0.29

1.54E−03

16:743998

cg17920646

 

0.39

0.67

−0.29

8.67E−04

8:216578

cg18136963

 

0.13

0.41

−0.28

1.54E−03

6:139013146

cg10578777

 

0.57

0.84

−0.27

2.07E−04

12:7781093

cg27415324

 

0.59

0.85

−0.27

1.38E−07

22:17901078

cg06864789

 

0.19

0.45

−0.26

9.11E−04

6:139012992

cg24506221

GSTM1

0.07

0.32

−0.26

2.94E−03

1:110230401

cg06417478

HOOK2

0.16

0.41

−0.25

3.19E−03

19:12876846

cg04554929

 

0.10

0.35

−0.25

3.27E−05

8:105342491

cg06202470

 

0.68

0.93

−0.24

2.13E−07

12:11700489

cg25828445

 

0.57

0.81

−0.24

3.08E−04

12:7781288

cg00817464

XPNPEP1

0.42

0.65

−0.24

4.65E−03

10:111662876

cg05886698

DDX53

0.67

0.90

−0.24

1.44E−06

X:23018110

cg24536782

 

0.36

0.60

−0.24

3.65E−03

8:216659

cg00239353

IL32

0.51

0.74

−0.23

1.52E−08

16:3115133

cg04752818

INTS1

0.63

0.87

−0.23

3.35E−06

7:1536622

cg08477332

S100A14

0.22

0.45

−0.23

1.47E−03

1:153590243

cg02025737

 

0.61

0.84

−0.23

2.46E−03

15:33384751

cg10044179

C21orf81

0.28

0.50

−0.22

2.43E−05

21:15352983

cg15641364

TAGLN2

0.17

0.40

−0.22

2.71E−07

1:159892206

cg01280390

CSGALNACT1

0.27

0.49

−0.22

4.86E−05

8:19363452

cg16154810

CERK

0.24

0.46

−0.22

6.06E−03

22:47135258