Table 3 Differentially methylated and accessible regions across paths and genomic features
Path | DMR direction | Chromatin | Distal promoter | Proximal promoter | 5′ UTR | Exon | intron | 3′ UTR | Intergenic |
|---|---|---|---|---|---|---|---|---|---|
Epi(dif) | Hyper | Closing | 1 | 1 | 0 | 0 | 1 | 0 | 0 |
Epi(dif) | Hyper | Opening | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Epi(dif) | Hyper | Stable_closed | 32 | 11 | 1 | 24 | 76 | 8 | 11 |
Epi(dif) | Hyper | Stable_open | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
Epi(dif) | Hypo | Closing | 5 | 2 | 0 | 5 | 13 | 2 | 0 |
Epi(dif) | Hypo | Opening | 34 | 23 | 7 | 37 | 117 | 7 | 30 |
Epi(dif) | Hypo | Stable_closed | 566 | 199 | 49 | 429 | 1814 | 132 | 255 |
Epi(dif) | Hypo | Stable_open | 160 | 71 | 24 | 154 | 447 | 50 | 61 |
Epi- > fiber(dif) | Hyper | Closing | 7 | 1 | 0 | 3 | 13 | 0 | 2 |
Epi- > fiber(dif) | Hyper | Opening | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Epi- > fiber(dif) | Hyper | Stable_closed | 21 | 7 | 2 | 10 | 51 | 1 | 6 |
Epi- > fiber(dif) | Hyper | Stable_open | 4 | 1 | 0 | 2 | 14 | 0 | 0 |
Epi- > fiber(dif) | Hypo | Closing | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Epi- > fiber(dif) | Hypo | Opening | 82 | 28 | 4 | 81 | 219 | 21 | 16 |
Epi- > fiber(dif) | Hypo | Stable_closed | 22 | 6 | 4 | 21 | 58 | 6 | 11 |
Epi- > fiber(dif) | Hypo | Stable_open | 14 | 6 | 2 | 14 | 37 | 6 | 6 |
Fiber(dif) | Hyper | Closing | 2 | 0 | 1 | 1 | 1 | 0 | 0 |
Fiber(dif) | Hyper | Opening | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
Fiber(dif) | Hyper | Stable_closed | 10 | 1 | 0 | 4 | 14 | 1 | 7 |
Fiber(dif) | Hyper | Stable_open | 1 | 0 | 0 | 2 | 2 | 1 | 0 |
Fiber(dif) | Hypo | Closing | 95 | 36 | 7 | 83 | 254 | 23 | 20 |
Fiber(dif) | Hypo | Opening | 21 | 10 | 5 | 36 | 73 | 12 | 10 |
Fiber(dif) | Hypo | Stable_closed | 161 | 70 | 14 | 139 | 616 | 43 | 82 |
Fiber(dif) | Hypo | Stable_open | 116 | 57 | 20 | 139 | 349 | 40 | 25 |