Fig. 3From: Who’s afraid of the X? Incorporating the X and Y chromosomes into the analysis of DNA methylation array dataSuggested pipeline for processing and analysis of X and Y chromosome DNAme array data. Overview of all stages of processing from raw data through to processed β or M values. Colors are used to indicate where updated methods should be used for best results (dark red), which steps need to be stratified by sex (light red), and where new processing/analysis steps are proposed to enable informative sex chromosome investigations (yellow)Back to article page