Chromosome | Position | SNP id | Nearest locus (linear distance) | Located within regulatory regions | Interacting genes (3D) | |
---|---|---|---|---|---|---|
Treg ChromHMM | FANTOM5 expressed enhancers | |||||
chr2 | 204700689 | rs12990970 | CTLA4 | TssAFlnk | CD28,CTLA4,ICOS | |
204732714 | rs231775 | TssAFlnk | RAPH1,CD28,ICOS | |||
204738919 | rs3087243 | EnhG | RAPH1 | |||
chr3 | 46327588 | rs11718385 | CCR3 | Enh | XCR1,CCR2,CCR5AS,CCR5 | |
46391390 | rs6441972 | CCR2 | TssAFlnk | CCR3 | ||
46401032 | rs3138042 | Enh | ||||
46411661 | rs2856758 | CCR5 | Enh | SLC6A20,FYCO1,CXCR6,XCR1, LOC105377067,CCR3,CCR1,CCR2 | ||
46412259 | rs1799988 | TssAFlnk | SLC6A20, FYCO1,CXCR6, XCR1, LOC105377067,CCR3,CCR1,CCR2 | |||
chr5 | 35852311 | rs6890853 | IL7R | TssAFlnk | SPEF2,LOC105374724,CAPSL | |
chr6 | 90948476 | rs62408222 | BACH2 | Enh | BACH2,LOC105377891 | |
90983850 | rs905671 | Enh | ✓ | BACH2 | ||
90984035 | rs943689 | Enh | ✓ | BACH2 | ||
90995980 | rs614120 | TssAFlnk | ✓ | BACH2,LOC105377891 | ||
chr7 | 50462418 | rs10216316 | IKZF1 | EnhG | SPATA48 | |
50462498 | rs10215297 | EnhG | SPATA48 | |||
50465206 | rs55981617 | EnhG | SPATA48,ZPBP,IKZF1 | |||
50465654 | rs12670555 | EnhG | SPATA48,ZPBP,IKZF1, | |||
chr10 | 6088743 | rs12722508 | IL2RA | TssAFlnk | RMB17 | |
6094697 | rs61839660 | TssAFlnk | IL2RA,RMB17,PFKFB3,LINC02649 | |||
6096667 | rs12722496 | ✓ | IL2RA,RBM17,PFKFB3,LINC02649 | |||
6107534 | rs11597367 | Enh | IL2RA,RBM17 | |||
chr12 | 9910720 | rs3176793 | CD69 | TssA | LOC374443,CLEC2D | |
9912182 | rs2160086 | TssA | LOC374443,CLEC2D | |||
9912730 | rs3176789 | TssA | LOC374443,CLEC2D,LOC105369728 | |||
9916640 | rs3136559 | Enh | LOC374443,CLEC2D,LOC105369728 | |||
9925758 | rs1029992 | Enh | ||||
9926064 | rs1029991 | Enh | ||||
9926397 | rs1029990 | Enh | ✓ | |||
9926624 | rs10844749 | Enh | ||||
9926784 | rs1540356 | Enh | ||||
chr15 | 38903672 | rs16967112 | RASGRP1 | Enh | ✓ | FAM98B,RASGRP1,LOC105370775, LOC105370780,LINC02694,FSIP1 |
38903884 | rs56249992 | Enh | RASGRP1,FAM98B, LOC105370775, LOC105370780,LINC02694,FSIP1 | |||
chr16 | 11188949 | rs71136618 | CLEC16A | Enh | CLEC16A,LOC107984859, LOC105371082,RMI2,SOCS1 | |
chr17 | 38755665 | rs11656173 | SMARCE1 | Enh | ✓ | CCR7 |
chr18 | 12838767 | rs17657058 | PTPN2 | Enh | LINC01882,PTPN2,SEH1L | |
chr22 | 30581722 | rs5753037 | HORMAD2 | Enh | HORMAD2,LIF-AS1,LIF |