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Table 6 GO Cellular Component terms and genes that were enriched among differentially expressed genes in ventricles from juvenile snapping turtles

From: Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle

locus_number (in snapping turtle) gene_name gene_symbol
Collagen trimer
 CS000004853 Collagen type III alpha 1 chain COL3A1
 CS000025399 Collagen type IV alpha 6 chain COL4A6
 CS000009656 Collagen type VIII alpha 1 chain COL8A1
 CS000002886 Collagen type XV alpha 1 chain COL15A1
 CS000014058 Collagen, type XVIII, alpha 1 COL18A1
 CS000002530 Collagen type XX alpha 1 chain COL20A1
 CS000018990 Collagen type XXII alpha 1 chain COL22A1
 CS000007237 Collectin subfamily member 10 COLEC10
 CS000014966 Ficolin 3 FCN3
z-disc
 CS000009788 Bone morphogenetic protein 10 BMP10
 CS000011960 Crystallin alpha B CRYAB
 CS000018274 Cysteine and glycine rich protein 1 CSRP1
 CS000002632 Cysteine and glycine rich protein 3 CSRP3
 CS000023885 Formin homology 2 domain containing 3 FHOD3
 CS000007378 Heat shock protein family B (small) member 1 HSPB1
 CS000019220 Keratin 8 KRT8
 CS000005252 Myomesin 3 MYOM3
 CS000000499 Myopalladin MYPN
 CS000015509 Sodium voltage-gated channel alpha subunit 5 SCN5A
 CS000023280 Sorbin and SH3 domain containing 2 SORBS2
Extracellular space
 CS000008845 Apolipoprotein F APOF
 CS000009788 Bone morphogenetic protein 10 BMP10
 CS000004917 Bone morphogenetic protein receptor type 2 BMPR2
 CS000004554 Complement C1r C1R
 CS000021043 Complement C1s C1S
 CS000023075 CD109 molecule CD109
 CS000003093 Cadherin 13 CDH13
 CS000003059 Carboxylesterase 2 CES2
 CS000010784 Cholesteryl ester transfer protein CETP
 CS000014980 Complement factor B CFB
 CS000008574 2′,3′-Cyclic nucleotide 3′ phosphodiesterase CNP
 CS000002886 Collagen type XV alpha 1 chain COL15A1
 CS000014058 Collagen, type XVIII, alpha 1 COL18A1
 CS000002530 Collagen type XX alpha 1 chain COL20A1
 CS000018990 Collagen type XXII alpha 1 chain COL22A1
 CS000004853 Collagen type III alpha 1 chain COL3A1
 CS000025399 Collagen type IV alpha 6 chain COL4A6
 CS000009656 Collagen type VIII alpha 1 chain COL8A1
 CS000007237 Collectin subfamily member 10 COLEC10
 CS000005701 Extracellular leucine rich repeat and fibronectin type III domain containing 1 ELFN1
 CS000012011 Coagulation factor III, tissue factor F3
 CS000003405 Fibronectin 1 FN1
 CS000008168 Glucagon GCG
 CS000018642 Hyaluronan-binding protein 2 HABP2
 CS000007378 Heat shock protein family B (small) member 1 HSPB1
 CS000000714 Interleukin 22 IL22
 CS000005377 Galectin 1 LGALS1
 CS000024186 Leucine rich repeat containing 3B LRRC3B
 CS000000330 Matrix metallopeptidase 25 MMP25
 CS000001051 Monooxygenase DBH like 1 MOXD1
 CS000025418 Peptidylprolyl isomerase A PPIA
 CS000007586 Proline and arginine rich end leucine rich repeat protein PRELP
 CS000012528 Persephin PSPN
 CS000006963 Secretogranin II SCG2
 CS000024555 Stimulator of chondrogenesis 1 SCRG1
 CS000021605 Secreted frizzled related protein 4 SFRP4
 CS000008622 Sclerostin sost
 CS000011090 Secreted phosphoprotein 1 SPP1
 CS000002388 Suppression of tumorigenicity 14 ST14
 CS000025210 Wnt family member 11 WNT11
 CS000012404 Uncharacterized  
 CS000021864 PZP, alpha-2-macroglobulin like  
Extracellular region
 CS000014235 Anthrax toxin receptor 2 ANTXR2
 CS000003440 Apolipoprotein C1 apoc1
 CS000021833 Rho GTPase activating protein 45 ARHGAP45
 CS000009788 Bone morphogenetic protein 10 BMP10
 CS000004554 Complement C1r C1R
 CS000021043 Complement C1s C1S
 CS000010941 Coiled-coil domain containing 40 CCDC40
 CS000023075 CD109 molecule CD109
 CS000003093 Cadherin 13 CDH13
 CS000010784 Cholesteryl ester transfer protein CETP
 CS000014980 Complement factor B CFB
 CS000006114 Chordin like 1 CHRDL1
 CS000002886 Collagen type XV alpha 1 chain COL15A1
 CS000014058 Collagen, type XVIII, alpha 1 COL18A1
 CS000002530 Collagen type XX alpha 1 chain COL20A1
 CS000018990 Collagen type XXII alpha 1 chain COL22A1
 CS000004853 Collagen type III alpha 1 chain COL3A1
 CS000025399 Collagen type IV alpha 6 chain COL4A6
 CS000009656 Collagen type VIII alpha 1 chain COL8A1
 CS000007237 Collectin subfamily member 10 COLEC10
 CS000009979 Cysteine rich transmembrane BMP regulator 1 CRIM1
 CS000011191 Deoxyribonuclease 1 like 3 DNASE1L3
 CS000021606 Ependymin related 1 EPDR1
 CS000013674 Eva-1 homolog C EVA1C
 CS000014966 Ficolin 3 FCN3
 CS000002168 Fibroblast growth factor receptor 3 FGFR3
 CS000003405 Fibronectin 1 FN1
 CS000002902 Gamma-aminobutyric acid type B receptor subunit 1 GABBR1
 CS000008168 Glucagon GCG
 CS000009498 Glypican 3 GPC3
 CS000018642 Hyaluronan-binding protein 2 HABP2
 CS000000714 Interleukin 22 IL22
 CS000012953 Immunoglobulin superfamily containing leucine-rich repeat ISLR
 CS000005377 Galectin 1 LGALS1
 CS000012971 Neuron derived neurotrophic factor NDNF
 CS000021269 Neural EGFL like 1 NELL1
 CS000012602 Neuritin 1 NRN1
 CS000002394 Neurotrimin NTM
 CS000025418 Peptidylprolyl isomerase A PPIA
 CS000007586 Proline and arginine rich end leucine rich repeat protein PRELP
 CS000012962 Protease, serine 12 PRSS12
 CS000012528 Persephin PSPN
 CS000013172 Sperm flagellar 2 SPEF2
 CS000011090 Secreted phosphoprotein 1 SPP1
 CS000019009 Thrombospondin type 1 domain containing 7A THSD7A
 CS000015148 Tumor necrosis factor superfamily member 10 TNFSF10
 CS000011540 von Willebrand factor A domain containing 3A VWA3A
 CS000013624 von Willebrand factor A domain containing 5B1 VWA5B1
 CS000025210 Wnt family member 11 WNT11
 CS000012404 Uncharacterized  
  1. Gene names and gene symbols are listed for each enriched GO term. GO terms were considered significant when FDR corrected p ≤ 0.05
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Epigenetics & Chromatin

ISSN: 1756-8935