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Table 3 Genes that displayed significant oxygen concentration by age interactions in ventricles from juvenile snapping turtles exposed to normoxia (N21) or hypoxia (H10) during embryonic development and sampled at 7 months or 9 months of age

From: Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle

locus_number

gene_name

gene_symbol

CS000013624

von Willebrand factor A domain containing 5B1

VWA5B1

CS000017075

Adhesion G protein-coupled receptor D2

ADGRD2

CS000002650

Doublecortin domain containing 1

 

CS000020386

  

CS000005701

Extracellular leucine rich repeat and fibronectin type III domain containing 1

ELFN1

CS000007756

Raf-1 proto-oncogene, serine/threonine kinase

RAF1

CS000012404

  

CS000011576

Immunity related GTPase cinema

 

CS000017702

  

CS000017791

Gag-pol precursor polyprotein

 

CS000005252

Myomesin 3

MYOM3

CS000013643

Heat shock protein 30C L homeolog

 

CS000007769

  

CS000000238

Tryptophan hydroxylase 1

TPH1

CS000022856

  

CS000011558

Transmembrane channel-like 5

TMC5

CS000020596

Sortilin related VPS10 domain containing receptor 2

SORCS2

CS000004923

CD28 molecule

CD28

CS000008982

Regulator of G-protein signaling 5

RGS5

CS000001877

Glycoprotein nmb

GPNMB

CS000011960

Crystallin alpha B

CRYAB

CS000000625

HEN1 methyltransferase homolog 1

HENMT1

CS000011913

Heat shock protein 30C L homeolog

 

CS000021013

Fibrous sheath interacting protein 1

FSIP1

CS000005377

Galectin 1

LGALS1

CS000017153

Guanylate-binding protein 2-like

 

CS000000187

Phosphoglycerate dehydrogenase

PHGDH

CS000011024

Target of myb1-like 1 membrane trafficking protein

TOM1L1

CS000016415

Endogenous retrovirus group V member 2

 

CS000011191

Deoxyribonuclease 1 like 3

DNASE1L3

CS000003395

Ankyrin repeat and SOCS box containing 18

ASB18

CS000004493

Spindle assembly abnormal protein 6 homolog

 

CS000024997

Toll like receptor 6

TLR6

CS000023735

  

CS000001051

Monooxygenase DBH like 1

MOXD1

CS000000229

Potassium voltage-gated channel subfamily J member 11

KCNJ11

CS000001730

Ferredoxin 1

FDX1

CS000005131

Glutaredoxin

GLRX

CS000006114

Chordin like 1

CHRDL1

CS000012086

Actin, aortic smooth muscle-like

 

CS000003405

Fibronectin 1

FN1

CS000003059

Carboxylesterase 2

CES2

CS000003128

Cytochrome b-245 alpha chain

CYBA

CS000000901

Transmembrane protein 159 L homeolog

tmem159.L

CS000023152

Mindbomb E3 ubiquitin protein ligase 1

MIB1

CS000017081

Prostaglandin-endoperoxide synthase 1

PTGS1

CS000017005

Muskelin 1

MKLN1

CS000004866

Myosin IB

MYO1B

CS000013316

KIAA0368

KIAA0368

CS000001871

Rap guanine nucleotide exchange factor 5

RAPGEF5

CS000015369

Acyl-CoA-binding domain containing 6

ACBD6

CS000019402

Heat shock protein family B (small) member 3

HSPB3

CS000004507

Cathepsin L

ctsl

CS000009267

RAB32, member RAS oncogene family

RAB32

CS000003646

Ubiquitin conjugating enzyme E2 B

UBE2B

CS000023259

Crystallin zeta

CRYZ

CS000013749

Pitrilysin metallopeptidase 1

PITRM1

CS000024623

Myosin VC

MYO5C

CS000009274

Glycoprotein integral membrane 1

GINM1

CS000008916

Transmembrane protein 214

TMEM214

CS000002191

Endothelin-converting enzyme 2

ECE2

CS000002902

Gamma-aminobutyric acid type B receptor subunit 1

GABBR1

CS000011567

Glycogen synthase 1

GYS1

CS000024960

DExH-box helicase 9

DHX9

CS000023516

Hypoxia inducible factor 1 alpha subunit

HIF1A

CS000009882

Acyl-CoA oxidase 1

ACOX1

CS000017504

Unc-5 netrin receptor A

UNC5A

CS000005022

DnaJ heat shock protein family (Hsp40) member C11

DNAJC11

CS000003466

tRNA methyltransferase 10A

TRMT10A

CS000001723

ATM serine/threonine kinase

ATM

CS000007175

Adhesion G protein-coupled receptor L3

ADGRL3

CS000018314

General transcription factor IIIC subunit 2

 

CS000003458

SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1

SMARCAD1

CS000015974

Coiled-coil domain containing 130

CCDC130

CS000009858

Arginine demethylase and lysine hydroxylase

JMJD6

CS000025151

Jumonji and AT-rich interaction domain containing 2

JARID2

CS000014359

Peroxisomal biogenesis factor 26

PEX26

CS000004897

Transmembrane protein 237

TMEM237

CS000014907

Zinc finger protein 219

ZNF219

CS000014046

G protein-coupled receptor kinase 5-like

 

CS000011309

Zinc finger and SCAN domains 20

 

CS000003047

WD repeat domain 88

WDR88

CS000003006

Mucolipin 3

MCOLN3

CS000008630

  

CS000007667

FXYD domain containing ion transport regulator 3

 

CS000003008

Mucolipin 2

MCOLN2

CS000019541

Chromosome 21 orf 58

 

CS000009617

Transmembrane protease, serine 7

TMPRSS7

CS000019987

Plexin A3

 

CS000020555

Granzyme H

GZMH

CS000009788

Bone morphogenetic protein 10

BMP10

CS000011540

von Willebrand factor A domain containing 3A

VWA3A

CS000021466

  

CS000015152

  

CS000008845

Apolipoprotein F

APOF

CS000023912

  

CS000020445

UPF0061 protein xcc-b100,1894-like

 
  1. The transcriptome was analyzed via RNA-Seq. Differences in gene expression were considered significant when results from DESeq2 and ANOVA were concordant
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Epigenetics & Chromatin

ISSN: 1756-8935