Table 4 Hi-C datasets generated in human cells

Lieberman-Aiden et al. [157]

Blood cell lines

30

GEO

Dixon et al. [169]

ESCs and lung cell lines

700

GEO

Dixon and Selvaraj et al. [230]

Blood cell line

800

GEO

Jin and Li et al. [231]

Lung cell line

1500

GEO

Le Dily et al. [232]

Breast cell lines

200

GEO

Rao and Huntley et al. [141]

Blood cell lines

1700

4DN/GEO

Dixon and Jung et al. [233]

ESCs and ESC-derived cells

750

GEO

Grubert and Zaugg et al. [234]

Blood cell line

1400

GEO

Leung and Jung et al. [212]

Thymus, aorta, left ventricle, and liver

300

GEO

Sanborn and Rao et al. [235]

Blood cell lines, lung cell line, and breast cell line

100

4DN

Schmitt and Hu et al. [236]

ESCs, ESC-derived cells, heart, spleen, adrenal gland, brain, lung, pancrea, liver, bladder, ovary, muscle, intestine, and blood and lung cell lines

Cell lines: 800

Tissues: 200

GEO

Taberlay and Achinger-Kawecka et al. [237]

Prostate cell line

500

GEO

Won et al. [238]

Cortical tissues

2000

GEO/dbGaP

Fritz and Ghule et al. [239]

Breast cell lines

400

GEO

Haarhuis and van der Weide et al. [240]

Blood cell lines

150

4DN

Phanstiel and Van Bortle et al. [241]

Blood cell line

5000

Bioproject

Rao et al. [242]

Colon cell lines

1000

4DN

Rubin and Barajas et al. [243]

Keratinocyte and derived cells

400

GEO

Li and He et al. [244]

Blood cell line

400

GEO

Lin et al. [245]

Blood cell lines

750

GEO

Vian and Pękowska et al. [224]

Blood cell line

300

4DN

Abramo et al. [246]

Cervix adenocarcinoma cell lines

300

4DN

Gorkin and Qiu et al. [247]

Blood cell lines

700

GEO/4DN

Greenwald et al. [211]

iPSCs and iPSC-derived cells

300

GEO/dbGAP

Johnston et al. [29]

Brain cell lines

900

GEO

Ray and Munn et al. [248]

Blood cell line

200

4DN

Rhie et al. [13]

Prostate cell lines

1000

GEO

Zhang et al. [249]

ESCs and ESC-derived cells

3000

4DN

Akdemir et al. [250]

Blood cell lines, lung cell line, and breast cell line

350

GEO