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Table 4 Hi-C datasets generated in human cells

From: Molecular and computational approaches to map regulatory elements in 3D chromatin structure

Name of study Cell type Average read coverage (Million read pairs) Database
Lieberman-Aiden et al. [157] Blood cell lines 30 GEO
Dixon et al. [169] ESCs and lung cell lines 700 GEO
Dixon and Selvaraj et al. [230] Blood cell line 800 GEO
Jin and Li et al. [231] Lung cell line 1500 GEO
Le Dily et al. [232] Breast cell lines 200 GEO
Rao and Huntley et al. [141] Blood cell lines 1700 4DN/GEO
Dixon and Jung et al. [233] ESCs and ESC-derived cells 750 GEO
Grubert and Zaugg et al. [234] Blood cell line 1400 GEO
Leung and Jung et al. [212] Thymus, aorta, left ventricle, and liver 300 GEO
Sanborn and Rao et al. [235] Blood cell lines, lung cell line, and breast cell line 100 4DN
Schmitt and Hu et al. [236] ESCs, ESC-derived cells, heart, spleen, adrenal gland, brain, lung, pancrea, liver, bladder, ovary, muscle, intestine, and blood and lung cell lines Cell lines: 800
Tissues: 200
GEO
Taberlay and Achinger-Kawecka et al. [237] Prostate cell line 500 GEO
Won et al. [238] Cortical tissues 2000 GEO/dbGaP
Fritz and Ghule et al. [239] Breast cell lines 400 GEO
Haarhuis and van der Weide et al. [240] Blood cell lines 150 4DN
Phanstiel and Van Bortle et al. [241] Blood cell line 5000 Bioproject
Rao et al. [242] Colon cell lines 1000 4DN
Rubin and Barajas et al. [243] Keratinocyte and derived cells 400 GEO
Li and He et al. [244] Blood cell line 400 GEO
Lin et al. [245] Blood cell lines 750 GEO
Vian and Pękowska et al. [224] Blood cell line 300 4DN
Abramo et al. [246] Cervix adenocarcinoma cell lines 300 4DN
Gorkin and Qiu et al. [247] Blood cell lines 700 GEO/4DN
Greenwald et al. [211] iPSCs and iPSC-derived cells 300 GEO/dbGAP
Johnston et al. [29] Brain cell lines 900 GEO
Ray and Munn et al. [248] Blood cell line 200 4DN
Rhie et al. [13] Prostate cell lines 1000 GEO
Zhang et al. [249] ESCs and ESC-derived cells 3000 4DN
Akdemir et al. [250] Blood cell lines, lung cell line, and breast cell line 350 GEO