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Table 2 Top 20 differentially methylated probes with a logFC > 1 for the 72-h time point, ordered by magnitude of log2-fold change

From: Genome-wide impact of hydrogen peroxide on maintenance DNA methylation in replicating cells

Probe ID log2FC (4 hr) log2FC (72 hr) Adj p-val (72 h) Gene Chromosome Location
cg21998794 − 0.78 − 1.72 0.04 ELP4;IMMP1L* 11 31,530,551
cg02947434 − 0.62 − 1.72 0.05   12 33,728,505
cg26627970 − 0.45 − 1.64 0.04 KHDRBS2 6 62,993,589
cg13484357 − 1.28 − 1.6 0.05 SLC30A8* 8 118,125,096
cg10578504 − 1.02 − 1.54 0.04 SLC30A8* 8 118,145,984
cg06328725 − 1.09 − 1.5 0.05 PACRG* 6 163,171,959
cg05620710 − 0.71 − 1.48 0.05 * 5 140,010,064
cg05403127 − 1.04 − 1.43 0.06 LINC00703* 10 4,425,587
cg05655613 − 0.59 − 1.42 0.02 * 11 105,101,601
cg08223309 − 0.98 − 1.41 0.04 * 4 14,390,632
cg01909661 − 0.73 − 1.4 0.05 PTCHD1-AS* X 22,446,176
cg11932468 − 1.28 − 1.38 0.05 TRPA1;MSC-AS1* 8 72,954,594
cg19281347 − 1.09 − 1.38 0.05 * 2 83,883,578
cg02153561 − 0.75 − 1.37 0.06 * 18 70,077,275
cg06951009 − 1.19 − 1.35 0.06 * 4 12,547,176
cg22181263 − 0.23 − 1.31 0.02   6 63,922,844
cg21898358 − 1.01 − 1.31 0.06 LILRA* 19 54,805,375
cg18363176 − 1.32 − 1.26 0.05 FLI1** 11 128,606,110
cg05577994 − 1.45 − 1.25 0.04 EMX2OS** 10 119,254,968
cg23537032 − 0.61 − 1.25 0.06 * 6 24,165,998
  1. *Probes displayed a significant adj p-value at 4 h (log2FC > 1)
  2. **Probes displayed a significant adj p-value at 4 h (log2FC > 1.2)
  3. log2FC, log2-fold change of M values
  4. Adj.p-val., adjusted p-value