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Table 2 Top 20 differentially methylated probes with a logFC > 1 for the 72-h time point, ordered by magnitude of log2-fold change

From: Genome-wide impact of hydrogen peroxide on maintenance DNA methylation in replicating cells

Probe ID

log2FC (4 hr)

log2FC (72 hr)

Adj p-val (72 h)

Gene

Chromosome

Location

cg21998794

− 0.78

− 1.72

0.04

ELP4;IMMP1L*

11

31,530,551

cg02947434

− 0.62

− 1.72

0.05

 

12

33,728,505

cg26627970

− 0.45

− 1.64

0.04

KHDRBS2

6

62,993,589

cg13484357

− 1.28

− 1.6

0.05

SLC30A8*

8

118,125,096

cg10578504

− 1.02

− 1.54

0.04

SLC30A8*

8

118,145,984

cg06328725

− 1.09

− 1.5

0.05

PACRG*

6

163,171,959

cg05620710

− 0.71

− 1.48

0.05

*

5

140,010,064

cg05403127

− 1.04

− 1.43

0.06

LINC00703*

10

4,425,587

cg05655613

− 0.59

− 1.42

0.02

*

11

105,101,601

cg08223309

− 0.98

− 1.41

0.04

*

4

14,390,632

cg01909661

− 0.73

− 1.4

0.05

PTCHD1-AS*

X

22,446,176

cg11932468

− 1.28

− 1.38

0.05

TRPA1;MSC-AS1*

8

72,954,594

cg19281347

− 1.09

− 1.38

0.05

*

2

83,883,578

cg02153561

− 0.75

− 1.37

0.06

*

18

70,077,275

cg06951009

− 1.19

− 1.35

0.06

*

4

12,547,176

cg22181263

− 0.23

− 1.31

0.02

 

6

63,922,844

cg21898358

− 1.01

− 1.31

0.06

LILRA*

19

54,805,375

cg18363176

− 1.32

− 1.26

0.05

FLI1**

11

128,606,110

cg05577994

− 1.45

− 1.25

0.04

EMX2OS**

10

119,254,968

cg23537032

− 0.61

− 1.25

0.06

*

6

24,165,998

  1. *Probes displayed a significant adj p-value at 4 h (log2FC > 1)
  2. **Probes displayed a significant adj p-value at 4 h (log2FC > 1.2)
  3. log2FC, log2-fold change of M values
  4. Adj.p-val., adjusted p-value