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Table 1 The top 20 most significant differentially methylated genes with a log2FC > 1.2 at the 4-h time point, ordered by magnitude of log2-fold change

From: Genome-wide impact of hydrogen peroxide on maintenance DNA methylation in replicating cells

Probe ID

log2FC (4 h)

Adj p-val (4 h)

log2FC (72 h)

Chromosome

Location

Gene

cg21150892

2.94

0.04

0.27

1

183,846,009

RGL1

cg26890348

2.48

0.03

0.87

13

52,637,074

 

cg24024260

− 2.29

0.01

− 0.40

2

182,174,340

LOC101927156

cg05047191

− 2.23

0.04

− 0.33

12

15,304,108

RERG

cg00192946

− 2.19

0.01

− 0.95

X

32,430,274

DMD

cg21426441

− 2.19

0.04

− 0.77

X

17,260,259

 

cg14954143

− 2.13

0.02

− 0.79

3

162,071,211

 

cg02187176

2.1

0.04

0.61

13

96,367,153

DNAJC3

cg23727674

− 2.09

0.03

− 0.30

2

148,602,993

ACVR2A

cg25969765

− 2.07

0.03

− 0.80

18

58,350,853

 

cg11372135

− 2.05

0.01

− 0.54

10

18,629,284

CACNB2

ch.X.16400295F

− 2.04

0.02

− 0.76

X

16,490,374

 

cg03012782

− 1.87

0.03

− 1.08

3

112,250,543

 

cg06780892

− 1.87

0.04

− 0.77

7

20,638,177

 

cg15074165

− 1.85

0.03

− 1.00

X

71,792,745

HDAC8

cg09333215

− 1.84

0.01

− 0.17

1

88,475,866

 

cg01492091

− 1.81

0.02

− 0.91

7

31,460,998

 

cg08892255

− 1.8

0.03

− 1.02

20

21,928,217

 

cg07042371

− 1.77

0.02

− 0.71

5

54,468,233

MIR449C

cg01769501

− 1.77

0.04

− 0.67

4

76,912,251

SDAD1

  1. log2FC, log2-fold change of M values
  2. Adj.p-val, adjusted p-value