Skip to main content

Table 2 Comparison of MC-seq between samples with high, medium, and low DNA input amount

From: Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells

Participant ID

DNA amount

High

Medium

Common CpG

Pearson correlation

S1

3,406,879

2,768,456

2,747,844

0.984

S2

3,642,776

3,338,200

3,283,296

0.984

S3

3,722,552

3,119,259

3,101,938

0.977

S4

4,061,994

2,958,772

2,957,239

0.979

 

DNA amount

High

Low

Common CpG

Pearson correlation

S1

3,406,879

1,774,940

1,771,936

0.960

S2

3,642,776

1,831,086

1,829,919

0.966

S3

3,722,552

2,154,732

2,153,175

0.974

S4

4,061,994

1,758,834

1,758,622

0.963

 

DNA amount

Medium

Low

Common CpG

Pearson correlation

S1

2,768,456

1,774,940

1,745,241

0.942

S2

3,338,200

1,831,086

1,827,536

0.943

S3

3,119,259

2,154,732

2,135,980

0.939

S4

2,958,772

1,758,834

1,744,416

0.928

Back to article page

Epigenetics & Chromatin

ISSN: 1756-8935