Table 5 Sequence data verifies the presence of SNPs identified using MethylToSNP
From: MethylToSNP: identifying SNPs in Illumina DNA methylation array data
cg IDa | Chromosome | CpG position (hg38) | SNP coordinate within 10Â bp | rs ID | Information |
|---|---|---|---|---|---|
cg00786635 | chr1 | 25,267,710–25,267,711 | 25,267,707 | rs145726224 | Common in African populations including southern Africans |
25,267,714 | N/A | Rare, found in one southern African | |||
cg07482220 | chr6 | 32,178,742–32,178,743 | 32,178,737 | rs112124640 | Rare, identified in 3 southern Africans |
cg18976974 | chr8 | 102,978,096–102,978,097 | 102,978,097 | N/A | Rare, only in one genome |
cg10633981 | chr11 | 16,758,221–16,758,222 | N/A | N/A | No WGS data for genome of interest |