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Table 2 Sequencing results of three sites in the YRI predictions

From: MethylToSNP: identifying SNPs in Illumina DNA methylation array data

Probe of interest (genomic position)

MethylToSNP reliability score from 70 samples

Example genome

Average methylation level from array data

Predicted genotype (bisulfite-treated)

Average methylation level from bisulfite sequencing

Sequenced genotype

cg06192753

chr19:13068298

0.042

NA19131

0.703

C/C

0.732

C/C

NA18506

0.440

C/T

0.435

C/C

NA18912

0.127

T/T

0.001

C/C

cg23886551

chr14:105992620

0.034

NA19172

0.830

C/C

0.913

C/C

NA18503

0.405

C/T

0.446

C/C

NA19222

0.113

T/T

0.020

C/C

cg18335068

chr19:53757911

0.070

NA18861

0.752

C/C

0.801

C/C

NA19161

0.510

C/T

0.500

C/C

NA18505

0.228

T/T

0.181

C/C

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Epigenetics & Chromatin

ISSN: 1756-8935