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Table 1 Localisation of large AMRs

From: Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate

AMR genomic position No. CpGs AMR width (bps) Genes
chr1:2112321–2234147 217 121,827 PRKCZ;SKI;FAAP20
chr1:16624194–16728492 362 104,299 FAM231A;MIR3675;RNVU1-18
chr5:140786373–140843584 347 57,212 PCDHA2;PCDHA3;PCDHA4;PCDHA5;PCDHA6;PCDHA7;PCDHA8;PCDHA9;PCDHA1
chr5:140848544–140927477 263 78,934 PCDHA10;PCDHA11;PCDHA12;PCDHA13;PCDHAC1;PCDHA9;PCDHA1;PCDHA2;PCDHA3;PCDHA4;PCDHA5;PCDHA6;PCDHA7;PCDHA8
chr5:141121778–141208851 221 87,074 PCDHB4;PCDHB5;PCDHB6;PCDHB7;PCDHB8;PCDHB16;PCDHB9;PCDHB10;PCDHB11;PCDHB12
chr5:141321015–141390082 592 69,068 PCDHGA1;PCDHGA2;PCDHGA3;PCDHGB1;PCDHGA4;PCDHGB2;PCDHGA5;PCDHGB3;PCDHGA6;PCDHGA7;PCDHGB4;PCDHGA8;TAF7
chr5:141392580–141478530 615 85,951 PCDHGA8;PCDHGB5;PCDHGA9;PCDHGB6;PCDHGA10;PCDHGB7;PCDHGA11;PCDHGA12;PCDHGC3;PCDHGA1;PCDHGA2;PCDHGA3;PCDHGB1;PCDHGA4;PCDHGB2;PCDHGA5;PCDHGB3;PCDHGA6;PCDHGA7;PCDHGB4
chr6:32073900–32155177 216 81,278 PPT2;PPT2-EGFL8;TNXB;ATF6B;FKBPL;PRRT1;LOC100507547
chr7:27098296–27174773 386 76,478 HOTAIRM1;HOXA-AS2;HOXA-AS3;HOXA10-AS;HOXA2;HOXA3;HOXA4;HOXA5;HOXA6;HOXA7;HOXA9;MIR196B;HOXA10;HOXA1;HOXA10-HOXA9
chr21:8433975–8438909 293 4935 LOC100861532;LOC100008587;LOC100008589
chr21:8440273–8452215 204 11,943 LOC100008589
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