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Fig. 5 | Epigenetics & Chromatin

Fig. 5

From: XL-DNase-seq: improved footprinting of dynamic transcription factors

Fig. 5

TF regulatory networks from XL-DNase-seq have reproducible connections as well as new connections. a De novo construction of transcriptional regulatory networks. FDR 1% footprints within 5 kb of TSSs were used to obtain regulatory relationships. b TF regulatory network derived from 0.1% formaldehyde 10 min XL-DNase-seq data (MS5 and MS11, merged) after correcting for the dimer bias of DNase. Regulatory connections which were also detected in the network from native DNase-seq are marked in blue. See also Additional file 2: Fig. S8

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