TY - JOUR AU - Luger, K. AU - Mader, A. W. AU - Richmond, R. K. AU - Sargent, D. F. AU - Richmond, T. J. PY - 1997 DA - 1997// TI - Crystal structure of the nucleosome core particle at 2.8 A resolution JO - Nature VL - 389 UR - https://doi.org/10.1038/38444 DO - 10.1038/38444 ID - Luger1997 ER - TY - JOUR AU - Hergeth, S. P. AU - Schneider, R. PY - 2015 DA - 2015// TI - The H1 linker histones: multifunctional proteins beyond the nucleosomal core particle JO - EMBO Rep VL - 16 UR - https://doi.org/10.15252/embr.201540749 DO - 10.15252/embr.201540749 ID - Hergeth2015 ER - TY - JOUR AU - Hota, S. K. AU - Bruneau, B. G. PY - 2016 DA - 2016// TI - ATP-dependent chromatin remodeling during mammalian development JO - Development VL - 143 UR - https://doi.org/10.1242/dev.128892.8 DO - 10.1242/dev.128892.8 ID - Hota2016 ER - TY - JOUR AU - Tropberger, P. AU - Schneider, R. PY - 2010 DA - 2010// TI - Going global: novel histone modifications in the globular domain of H3 JO - Epigenetics VL - 5 UR - https://doi.org/10.4161/epi.5.2.11075 DO - 10.4161/epi.5.2.11075 ID - Tropberger2010 ER - TY - JOUR AU - Kebede, A. F. AU - Schneider, R. AU - Daujat, S. PY - 2015 DA - 2015// TI - Novel types and sites of histone modifications emerge as players in the transcriptional regulation contest JO - FEBS J VL - 282 UR - https://doi.org/10.1111/febs.13047 DO - 10.1111/febs.13047 ID - Kebede2015 ER - TY - JOUR AU - Zhang, T. AU - Cooper, S. AU - Brockdorff, N. PY - 2015 DA - 2015// TI - The interplay of histone modifications—writers that read JO - EMBO Rep VL - 16 UR - https://doi.org/10.15252/embr.201540945 DO - 10.15252/embr.201540945 ID - Zhang2015 ER - TY - JOUR AU - Bonisch, C. AU - Hake, S. B. PY - 2012 DA - 2012// TI - Histone H2A variants in nucleosomes and chromatin: more or less stable? JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks865 DO - 10.1093/nar/gks865 ID - Bonisch2012 ER - TY - JOUR AU - Moosmann, A. AU - Campsteijn, C. AU - Jansen, P. W. AU - Nasrallah, C. AU - Raasholm, M. AU - Stunnenberg, H. G. PY - 2011 DA - 2011// TI - Histone variant innovation in a rapidly evolving chordate lineage JO - BMC Evol Biol VL - 11 UR - https://doi.org/10.1186/1471-2148-11-208 DO - 10.1186/1471-2148-11-208 ID - Moosmann2011 ER - TY - JOUR AU - Siegel, T. N. AU - Hekstra, D. R. AU - Kemp, L. E. AU - Figueiredo, L. M. AU - Lowell, J. E. AU - Fenyo, D. PY - 2009 DA - 2009// TI - Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei JO - Genes Dev VL - 23 UR - https://doi.org/10.1101/gad.1790409 DO - 10.1101/gad.1790409 ID - Siegel2009 ER - TY - JOUR AU - West, M. H. AU - Bonner, W. M. PY - 1980 DA - 1980// TI - Histone 2A, a heteromorphous family of eight protein species JO - Biochemistry VL - 19 UR - https://doi.org/10.1021/bi00555a022 DO - 10.1021/bi00555a022 ID - West1980 ER - TY - JOUR AU - Allis, C. D. AU - Richman, R. AU - Gorovsky, M. A. AU - Ziegler, Y. S. AU - Touchstone, B. AU - Bradley, W. A. PY - 1986 DA - 1986// TI - hv1 is an evolutionarily conserved H2A variant that is preferentially associated with active genes JO - J Biol Chem VL - 261 ID - Allis1986 ER - TY - JOUR AU - Daal, A. AU - White, E. M. AU - Gorovsky, M. A. AU - Elgin, S. C. PY - 1988 DA - 1988// TI - Drosophila has a single copy of the gene encoding a highly conserved histone H2A variant of the H2AF/Z type JO - Nucl Acids Res VL - 16 UR - https://doi.org/10.1093/nar/16.15.7487 DO - 10.1093/nar/16.15.7487 ID - Daal1988 ER - TY - JOUR AU - Daal, A. AU - Elgin, S. C. PY - 1992 DA - 1992// TI - A histone variant, H2AvD, is essential in Drosophila melanogaster JO - Mol Biol Cell VL - 3 UR - https://doi.org/10.1091/mbc.3.6.593 DO - 10.1091/mbc.3.6.593 ID - Daal1992 ER - TY - JOUR AU - Hatch, C. L. AU - Bonner, W. M. PY - 1990 DA - 1990// TI - The human histone H2A.Z gene sequence and regulation JO - J Biol Chem VL - 265 ID - Hatch1990 ER - TY - JOUR AU - Faast, R. AU - Thonglairoam, V. AU - Schulz, T. C. AU - Beall, J. AU - Wells, J. R. AU - Taylor, H. PY - 2001 DA - 2001// TI - Histone variant H2A.Z is required for early mammalian development JO - Curr Biol VL - 11 UR - https://doi.org/10.1016/S0960-9822(01)00329-3 DO - 10.1016/S0960-9822(01)00329-3 ID - Faast2001 ER - TY - JOUR AU - Jackson, J. D. AU - Gorovsky, M. A. PY - 2000 DA - 2000// TI - Histone H2A.Z has a conserved function that is distinct from that of the major H2A sequence variants JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.19.3811 DO - 10.1093/nar/28.19.3811 ID - Jackson2000 ER - TY - JOUR AU - Coon, J. J. AU - Ueberheide, B. AU - Syka, J. E. AU - Dryhurst, D. D. AU - Ausio, J. AU - Shabanowitz, J. PY - 2005 DA - 2005// TI - Protein identification using sequential ion/ion reactions and tandem mass spectrometry JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0503189102 DO - 10.1073/pnas.0503189102 ID - Coon2005 ER - TY - JOUR AU - Talbert, P. B. AU - Ahmad, K. AU - Almouzni, G. AU - Ausio, J. AU - Berger, F. AU - Bhalla, P. L. PY - 2012 DA - 2012// TI - A unified phylogeny-based nomenclature for histone variants JO - Epigenet Chromatin VL - 5 UR - https://doi.org/10.1186/1756-8935-5-7 DO - 10.1186/1756-8935-5-7 ID - Talbert2012 ER - TY - JOUR AU - Eirin-Lopez, J. M. AU - Gonzalez-Romero, R. AU - Dryhurst, D. AU - Ishibashi, T. AU - Ausio, J. PY - 2009 DA - 2009// TI - The evolutionary differentiation of two histone H2A.Z variants in chordates (H2A.Z-1 and H2A.Z-2) is mediated by a stepwise mutation process that affects three amino acid residues JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-31 DO - 10.1186/1471-2148-9-31 ID - Eirin-Lopez2009 ER - TY - JOUR AU - Dryhurst, D. AU - Ishibashi, T. AU - Rose, K. L. AU - Eirin-Lopez, J. M. AU - McDonald, D. AU - Silva-Moreno, B. PY - 2009 DA - 2009// TI - Characterization of the histone H2A.Z-1 and H2A.Z-2 isoforms in vertebrates JO - BMC Biol VL - 7 UR - https://doi.org/10.1186/1741-7007-7-86 DO - 10.1186/1741-7007-7-86 ID - Dryhurst2009 ER - TY - JOUR AU - Draker, R. AU - Ng, M. K. AU - Sarcinella, E. AU - Ignatchenko, V. AU - Kislinger, T. AU - Cheung, P. PY - 2012 DA - 2012// TI - CA combination of H2A.Z and H4 acetylation recruits Brd2 to chromatin during transcriptional activation JO - PLoS Genet VL - 8 UR - https://doi.org/10.1371/journal.pgen.1003047 DO - 10.1371/journal.pgen.1003047 ID - Draker2012 ER - TY - JOUR AU - Matsuda, R. AU - Hori, T. AU - Kitamura, H. AU - Takeuchi, K. AU - Fukagawa, T. AU - Harata, M. PY - 2010 DA - 2010// TI - Identification and characterization of the two isoforms of the vertebrate H2A.Z histone variant JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq171 DO - 10.1093/nar/gkq171 ID - Matsuda2010 ER - TY - JOUR AU - Vardabasso, C. AU - Gaspar-Maia, A. AU - Hasson, D. AU - Punzeler, S. AU - Valle-Garcia, D. AU - Straub, T. PY - 2015 DA - 2015// TI - Histone variant H2A.Z.2 mediates proliferation and drug sensitivity of malignant melanoma JO - Mol Cell VL - 59 UR - https://doi.org/10.1016/j.molcel.2015.05.009 DO - 10.1016/j.molcel.2015.05.009 ID - Vardabasso2015 ER - TY - JOUR AU - Dunn, C. J. AU - Sarkar, P. AU - Bailey, E. R. AU - Farris, S. AU - Zhao, M. AU - Ward, J. M. PY - 2017 DA - 2017// TI - Histone hypervariants H2A.Z.1 and H2A.Z.2 play independent and context-specific roles in neuronal activity-induced transcription of Arc/Arg3.1 and other immediate early genes JO - Neuro UR - https://doi.org/10.1523/eneuro.0040-17.2017 DO - 10.1523/eneuro.0040-17.2017 ID - Dunn2017 ER - TY - JOUR AU - Nishibuchi, I. AU - Suzuki, H. AU - Kinomura, A. AU - Sun, J. AU - Liu, N. A. AU - Horikoshi, Y. PY - 2014 DA - 2014// TI - Reorganization of damaged chromatin by the exchange of histone variant H2A.Z-2 JO - Int J Radiat Oncol Biol Phys VL - 89 UR - https://doi.org/10.1016/j.ijrobp.2014.03.031 DO - 10.1016/j.ijrobp.2014.03.031 ID - Nishibuchi2014 ER - TY - JOUR AU - Horikoshi, N. AU - Sato, K. AU - Shimada, K. AU - Arimura, Y. AU - Osakabe, A. AU - Tachiwana, H. PY - 2013 DA - 2013// TI - Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2 JO - Acta Crystallogr Sect D: Biol Crystallogr VL - 69 UR - https://doi.org/10.1107/S090744491302252X DO - 10.1107/S090744491302252X ID - Horikoshi2013 ER - TY - JOUR AU - Bonisch, C. AU - Schneider, K. AU - Punzeler, S. AU - Wiedemann, S. M. AU - Bielmeier, C. AU - Bocola, M. PY - 2012 DA - 2012// TI - H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks267 DO - 10.1093/nar/gks267 ID - Bonisch2012 ER - TY - JOUR AU - Adam, M. AU - Robert, F. AU - Larochelle, M. AU - Gaudreau, L. PY - 2001 DA - 2001// TI - H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions JO - Mol Cell Biol VL - 21 UR - https://doi.org/10.1128/MCB.21.18.6270-6279.2001 DO - 10.1128/MCB.21.18.6270-6279.2001 ID - Adam2001 ER - TY - JOUR AU - Zovkic, I. B. AU - Paulukaitis, B. S. AU - Day, J. J. AU - Etikala, D. M. AU - Sweatt, J. D. PY - 2014 DA - 2014// TI - Histone H2A.Z subunit exchange controls consolidation of recent and remote memory JO - Nature VL - 515 UR - https://doi.org/10.1038/nature13707 DO - 10.1038/nature13707 ID - Zovkic2014 ER - TY - JOUR AU - Narkaj, K. AU - Stefanelli, G. AU - Wahdan, M. AU - Azam, A. B. AU - Ramzan, F. AU - Steininger, C. F. D. PY - 2018 DA - 2018// TI - Blocking H2A.Z Incorporation via Tip60 inhibition promotes systems consolidation of fear memory in mice JO - Neuro UR - https://doi.org/10.1523/ENEURO.0378-18.2018 DO - 10.1523/ENEURO.0378-18.2018 ID - Narkaj2018 ER - TY - JOUR AU - Shen, T. AU - Ji, F. AU - Wang, Y. AU - Lei, X. AU - Zhang, D. AU - Jiao, J. PY - 2008 DA - 2008// TI - Brain-specific deletion of histone variant H2Az results in cortical neurogenesis defects and neurodevelopmental disorder JO - Nuclic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gkx1295 DO - 10.1093/nar/gkx1295 ID - Shen2008 ER - TY - JOUR AU - Stefanelli, G. AU - Azam, A. B. AU - Walters, B. J. AU - Brimble, M. A. AU - Gettens, C. P. AU - Bouchard-Cannon, P. PY - 2018 DA - 2018// TI - Learning and age-related changes in genome-wide H2A.Z binding in the mouse hippocampus JO - Cell Rep VL - 22 UR - https://doi.org/10.1016/j.celrep.2018.01.020 DO - 10.1016/j.celrep.2018.01.020 ID - Stefanelli2018 ER - TY - JOUR AU - Domaschenz, R. AU - Kurscheid, S. AU - Nekrasov, M. AU - Han, S. AU - Tremethick, D. J. PY - 2017 DA - 2017// TI - The histone variant H2AZ is a master regulator of the Epithelial–Mesenchymal transition JO - Cell Rep. VL - 21 UR - https://doi.org/10.1016/j.celrep.2017.09.086 DO - 10.1016/j.celrep.2017.09.086 ID - Domaschenz2017 ER - TY - JOUR AU - Rangasamy, D. AU - Berven, L. AU - Ridgway, P. AU - Tremethick, D. J. PY - 2003 DA - 2003// TI - Pericentric heterochromatin becomes enriched with H2A.Z during early mammalian development JO - EMBO J VL - 22 UR - https://doi.org/10.1093/emboj/cdg160 DO - 10.1093/emboj/cdg160 ID - Rangasamy2003 ER - TY - JOUR AU - Fan, J. Y. AU - Rangasamy, D. AU - Luger, K. AU - Tremethick, D. J. PY - 2004 DA - 2004// TI - H2AZ alters the nucleosome surface to promote HP1alpha-mediated chromatin fiber folding JO - Mol Cell VL - 16 UR - https://doi.org/10.1016/j.molcel.2004.10.023 DO - 10.1016/j.molcel.2004.10.023 ID - Fan2004 ER - TY - JOUR AU - Rangasamy, D. AU - Greaves, I. AU - Tremethick, D. J. PY - 2004 DA - 2004// TI - RNA interference demonstrates a novel role for H2AZ in chromosome segregation JO - Nat Struct Mol Biol VL - 11 UR - https://doi.org/10.1038/nsmb786 DO - 10.1038/nsmb786 ID - Rangasamy2004 ER - TY - JOUR AU - Greaves, I. K. AU - Rangasamy, D. AU - Ridgway, P. AU - Tremethick, D. J. PY - 2007 DA - 2007// TI - H2AZ contributes to the unique 3D structure of the centromere JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0607870104 DO - 10.1073/pnas.0607870104 ID - Greaves2007 ER - TY - JOUR AU - Ryan, D. P. AU - Tremethick, D. J. PY - 2018 DA - 2018// TI - The interplay between H2A.Z and H3K9 methylation in regulating HP1alpha binding to linker histone-containing chromatin JO - Nucleic Acids Res. VL - 46 UR - https://doi.org/10.1093/nar/gky632 DO - 10.1093/nar/gky632 ID - Ryan2018 ER - TY - JOUR AU - Meneghini, M. D. AU - Wu, M. AU - Madhani, H. D. PY - 2003 DA - 2003// TI - Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin JO - Cell VL - 112 UR - https://doi.org/10.1016/S0092-8674(03)00123-5 DO - 10.1016/S0092-8674(03)00123-5 ID - Meneghini2003 ER - TY - JOUR AU - Babiarz, J. E. AU - Halley, J. E. AU - Rine, J. PY - 2006 DA - 2006// TI - Telomeric heterochromatin boundaries require NuA4-dependent acetylation of histone variant H2A.Z in Saccharomyces cerevisiae JO - Genes Dev VL - 20 UR - https://doi.org/10.1101/gad.1386306 DO - 10.1101/gad.1386306 ID - Babiarz2006 ER - TY - JOUR AU - Shia, W. J. AU - Li, B. AU - Workman, J. L. PY - 2006 DA - 2006// TI - SAS-mediated acetylation of histone H4 Lys 16 is required for H2A.Z incorporation at subtelomeric regions in Saccharomyces cerevisiae JO - Genes Dev VL - 20 UR - https://doi.org/10.1101/gad.1439206 DO - 10.1101/gad.1439206 ID - Shia2006 ER - TY - JOUR AU - Zhou, B. O. AU - Wang, S. S. AU - Xu, L. X. AU - Meng, F. L. AU - Xuan, Y. J. AU - Duan, Y. M. PY - 2010 DA - 2010// TI - SWR1 complex poises heterochromatin boundaries for antisilencing activity propagation JO - Mol Cell Biol. VL - 30 UR - https://doi.org/10.1128/mcb.01106-09 DO - 10.1128/mcb.01106-09 ID - Zhou2010 ER - TY - JOUR AU - Kalocsay, M. AU - Hiller, N. J. AU - Jentsch, S. PY - 2009 DA - 2009// TI - Chromosome-wide Rad51 spreading and SUMO-H2A.Z-dependent chromosome fixation in response to a persistent DNA double-strand break JO - Mol Cell VL - 33 UR - https://doi.org/10.1016/j.molcel.2009.01.016 DO - 10.1016/j.molcel.2009.01.016 ID - Kalocsay2009 ER - TY - JOUR AU - Xu, Y. AU - Ayrapetov, M. K. AU - Xu, C. AU - Gursoy-Yuzugullu, O. AU - Hu, Y. AU - Price, B. D. PY - 2012 DA - 2012// TI - Histone H2A.Z controls a critical chromatin remodeling step required for DNA double-strand break repair JO - Mol Cell VL - 48 UR - https://doi.org/10.1016/j.molcel.2012.09.026 DO - 10.1016/j.molcel.2012.09.026 ID - Xu2012 ER - TY - JOUR AU - Yu, Y. AU - Deng, Y. AU - Reed, S. H. AU - Millar, C. B. AU - Waters, R. PY - 2013 DA - 2013// TI - Histone variant Htz1 promotes histone H3 acetylation to enhance nucleotide excision repair in Htz1 nucleosomes JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt688 DO - 10.1093/nar/gkt688 ID - Yu2013 ER - TY - JOUR AU - Horigome, C. AU - Oma, Y. AU - Konishi, T. AU - Schmid, R. AU - Marcomini, I. AU - Hauer, M. H. PY - 2014 DA - 2014// TI - SWR1 and INO80 chromatin remodelers contribute to DNA double-strand break perinuclear anchorage site choice JO - Mol Cell VL - 55 UR - https://doi.org/10.1016/j.molcel.2014.06.027 DO - 10.1016/j.molcel.2014.06.027 ID - Horigome2014 ER - TY - JOUR AU - Gursoy-Yuzugullu, O. AU - Ayrapetov, M. K. AU - Price, B. D. PY - 2015 DA - 2015// TI - Histone chaperone Anp32e removes H2AZ from DNA double-strand breaks and promotes nucleosome reorganization and DNA repair JO - Proc Natl Acad Sci USA VL - 112 UR - https://doi.org/10.1073/pnas.1504868112 DO - 10.1073/pnas.1504868112 ID - Gursoy-Yuzugullu2015 ER - TY - JOUR AU - Rona, G. AU - Roberti, D. AU - Yin, Y. AU - Pagan, J. K. AU - Homer, H. AU - Sassani, E. PY - 2018 DA - 2018// TI - PARP1-dependent recruitment of the FBXL10-RNF68-RNF2 ubiquitin ligase to sites of DNA damage controls H2A.Z loading JO - Elife VL - 7 UR - https://doi.org/10.7554/eLife.38771 DO - 10.7554/eLife.38771 ID - Rona2018 ER - TY - JOUR AU - Gevry, N. AU - Chan, H. M. AU - Laflamme, L. AU - Livingston, D. M. AU - Gaudreau, L. PY - 2007 DA - 2007// TI - p21 transcription is regulated by differential localization of histone H2AZ JO - Genes Dev VL - 21 UR - https://doi.org/10.1101/gad.1545707 DO - 10.1101/gad.1545707 ID - Gevry2007 ER - TY - JOUR AU - Gevry, N. AU - Hardy, S. AU - Jacques, P. E. AU - Laflamme, L. AU - Svotelis, A. AU - Robert, F. PY - 2009 DA - 2009// TI - Histone H2A.Z is essential for estrogen receptor signaling JO - Genes Dev VL - 23 UR - https://doi.org/10.1101/gad.1787109 DO - 10.1101/gad.1787109 ID - Gevry2009 ER - TY - JOUR AU - Draker, R. AU - Sarcinella, E. AU - Cheung, P. PY - 2011 DA - 2011// TI - USP10 deubiquitylates the histone variant H2A.Z and both are required for androgen receptor-mediated gene activation JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1352 DO - 10.1093/nar/gkq1352 ID - Draker2011 ER - TY - JOUR AU - Dryhurst, D. AU - McMullen, B. AU - Fazli, L. AU - Rennie, P. S. AU - Ausio, J. PY - 2012 DA - 2012// TI - Histone H2A.Z prepares the prostate specific antigen (PSA) gene for androgen receptor-mediated transcription and is upregulated in a model of prostate cancer progression JO - Cancer Lett VL - 315 UR - https://doi.org/10.1016/j.canlet.2011.10.003 DO - 10.1016/j.canlet.2011.10.003 ID - Dryhurst2012 ER - TY - JOUR AU - Bellucci, L. AU - Dalvai, M. AU - Kocanova, S. AU - Moutahir, F. AU - Bystricky, K. PY - 2013 DA - 2013// TI - Activation of p21 by HDAC inhibitors requires acetylation of H2A.Z JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0054102 DO - 10.1371/journal.pone.0054102 ID - Bellucci2013 ER - TY - JOUR AU - Dalvai, M. AU - Fleury, L. AU - Bellucci, L. AU - Kocanova, S. AU - Bystricky, K. PY - 2013 DA - 2013// TI - TIP48/Reptin and H2A.Z requirement for initiating chromatin remodeling in estrogen-activated transcription JO - PLoS Genet VL - 9 UR - https://doi.org/10.1371/journal.pgen.1003387 DO - 10.1371/journal.pgen.1003387 ID - Dalvai2013 ER - TY - JOUR AU - Dalvai, M. AU - Bellucci, L. AU - Fleury, L. AU - Lavigne, A. C. AU - Moutahir, F. AU - Bystricky, K. PY - 2013 DA - 2013// TI - H2A.Z-dependent crosstalk between enhancer and promoter regulates cyclin D1 expression JO - Oncogene VL - 32 UR - https://doi.org/10.1038/onc.2012.442 DO - 10.1038/onc.2012.442 ID - Dalvai2013 ER - TY - JOUR AU - Law, C. AU - Cheung, P. PY - 2015 DA - 2015// TI - Expression of non-acetylatable H2A.Z in myoblast cells blocks myoblast differentiation through disruption of MyoD expression JO - J Biol Chem VL - 290 UR - https://doi.org/10.1074/jbc.M114.595462 DO - 10.1074/jbc.M114.595462 ID - Law2015 ER - TY - JOUR AU - Giaimo, B. D. AU - Ferrante, F. AU - Vallejo, D. M. AU - Hein, K. AU - Gutierrez-Perez, I. AU - Nist, A. PY - 2018 DA - 2018// TI - Histone variant H2A.Z deposition and acetylation directs the canonical Notch signaling response JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gky551 DO - 10.1093/nar/gky551 ID - Giaimo2018 ER - TY - JOUR AU - Ku, M. AU - Jaffe, J. D. AU - Koche, R. P. AU - Rheinbay, E. AU - Endoh, M. AU - Koseki, H. PY - 2012 DA - 2012// TI - H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions JO - Genome Biol VL - 13 UR - https://doi.org/10.1186/gb-2012-13-10-r85 DO - 10.1186/gb-2012-13-10-r85 ID - Ku2012 ER - TY - JOUR AU - Valdes-Mora, F. AU - Gould, C. M. AU - Colino-Sanguino, Y. AU - Qu, W. AU - Song, J. Z. AU - Taylor, K. M. PY - 2017 DA - 2017// TI - Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer JO - Nat Commun VL - 8 UR - https://doi.org/10.1038/s41467-017-01393-8 DO - 10.1038/s41467-017-01393-8 ID - Valdes-Mora2017 ER - TY - JOUR AU - Valdes-Mora, F. AU - Song, J. Z. AU - Statham, A. L. AU - Strbenac, D. AU - Robinson, M. D. AU - Nair, S. S. PY - 2012 DA - 2012// TI - Acetylation of H2AZ is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer JO - Genome Res VL - 22 UR - https://doi.org/10.1101/gr.118919.110 DO - 10.1101/gr.118919.110 ID - Valdes-Mora2012 ER - TY - JOUR AU - Santisteban, M. S. AU - Kalashnikova, T. AU - Smith, M. M. PY - 2000 DA - 2000// TI - Histone H2A.Z regulates transcription and is partially redundant with nucleosome remodeling complexes JO - Cell VL - 103 UR - https://doi.org/10.1016/S0092-8674(00)00133-1 DO - 10.1016/S0092-8674(00)00133-1 ID - Santisteban2000 ER - TY - JOUR AU - Li, B. AU - Pattenden, S. G. AU - Lee, D. AU - Gutierrez, J. AU - Chen, J. AU - Seidel, C. PY - 2005 DA - 2005// TI - Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0507975102 DO - 10.1073/pnas.0507975102 ID - Li2005 ER - TY - JOUR AU - Buchanan, L. AU - Durand-Dubief, M. AU - Roguev, A. AU - Sakalar, C. AU - Wilhelm, B. AU - Stralfors, A. PY - 2009 DA - 2009// TI - The Schizosaccharomyces pombe JmjC-protein, Msc1, prevents H2A.Z localization in centromeric and subtelomeric chromatin domains JO - PLoS Genet VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000726 DO - 10.1371/journal.pgen.1000726 ID - Buchanan2009 ER - TY - JOUR AU - Wan, Y. AU - Saleem, R. A. AU - Ratushny, A. V. AU - Roda, O. AU - Smith, J. J. AU - Lin, C. H. PY - 2009 DA - 2009// TI - Role of the histone variant H2A.Z/Htz1p in TBP recruitment, chromatin dynamics, and regulated expression of oleate-responsive genes JO - Mol Cell Biol. VL - 29 UR - https://doi.org/10.1128/mcb.01233-08 DO - 10.1128/mcb.01233-08 ID - Wan2009 ER - TY - JOUR AU - Kusch, T. AU - Mei, A. AU - Nguyen, C. PY - 2014 DA - 2014// TI - Histone H3 lysine 4 trimethylation regulates cotranscriptional H2A variant exchange by Tip60 complexes to maximize gene expression JO - Proc Natl Acad Sci USA. VL - 111 UR - https://doi.org/10.1073/pnas.1320337111 DO - 10.1073/pnas.1320337111 ID - Kusch2014 ER - TY - JOUR AU - Hu, Y. AU - Shen, Y. AU - Conde, E. S. N. AU - Zhou, D. X. PY - 2011 DA - 2011// TI - The role of histone methylation and H2A.Z occupancy during rapid activation of ethylene responsive genes JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0028224 DO - 10.1371/journal.pone.0028224 ID - Hu2011 ER - TY - JOUR AU - Cui, K. AU - Zang, C. AU - Roh, T. Y. AU - Schones, D. E. AU - Childs, R. W. AU - Peng, W. PY - 2009 DA - 2009// TI - Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation JO - Cell Stem Cell VL - 4 UR - https://doi.org/10.1016/j.stem.2008.11.011 DO - 10.1016/j.stem.2008.11.011 ID - Cui2009 ER - TY - JOUR AU - Farris, S. D. AU - Rubio, E. D. AU - Moon, J. J. AU - Gombert, W. M. AU - Nelson, B. H. AU - Krumm, A. PY - 2005 DA - 2005// TI - Transcription-induced chromatin remodeling at the c-myc gene involves the local exchange of histone H2A.Z JO - J Biol Chem. VL - 280 UR - https://doi.org/10.1074/jbc.m501784200 DO - 10.1074/jbc.m501784200 ID - Farris2005 ER - TY - JOUR AU - John, S. AU - Sabo, P. J. AU - Johnson, T. A. AU - Sung, M. H. AU - Biddie, S. C. AU - Lightman, S. L. PY - 2008 DA - 2008// TI - Interaction of the glucocorticoid receptor with the chromatin landscape JO - Mol Cell VL - 29 UR - https://doi.org/10.1016/j.molcel.2008.02.010 DO - 10.1016/j.molcel.2008.02.010 ID - John2008 ER - TY - JOUR AU - Sutcliffe, E. L. AU - Parish, I. A. AU - He, Y. Q. AU - Juelich, T. AU - Tierney, M. L. AU - Rangasamy, D. PY - 2009 DA - 2009// TI - Dynamic histone variant exchange accompanies gene induction in T cells JO - Mol Cell Biol VL - 29 UR - https://doi.org/10.1128/MCB.01590-08 DO - 10.1128/MCB.01590-08 ID - Sutcliffe2009 ER - TY - JOUR AU - Amat, R. AU - Gudas, L. J. PY - 2011 DA - 2011// TI - RARgamma is required for correct deposition and removal of Suz12 and H2A.Z in embryonic stem cells JO - J Cell Physiol VL - 226 UR - https://doi.org/10.1002/jcp.22420 DO - 10.1002/jcp.22420 ID - Amat2011 ER - TY - JOUR AU - Chauhan, S. AU - Boyd, D. D. PY - 2012 DA - 2012// TI - Regulation of u-PAR gene expression by H2A.Z is modulated by the MEK-ERK/AP-1 pathway JO - Nucleic Acids Res. VL - 40 UR - https://doi.org/10.1093/nar/gkr725 DO - 10.1093/nar/gkr725 ID - Chauhan2012 ER - TY - JOUR AU - Au-Yeung, N. AU - Horvath, C. M. PY - 2018 DA - 2018// TI - Histone H2AZ suppression of interferon-stimulated transcription and antiviral immunity is modulated by GCN5 and BRD2 JO - iScience VL - 6 UR - https://doi.org/10.1016/j.isci.2018.07.013 DO - 10.1016/j.isci.2018.07.013 ID - Au-Yeung2018 ER - TY - JOUR AU - Kim, K. AU - Punj, V. AU - Choi, J. AU - Heo, K. AU - Kim, J. M. AU - Laird, P. W. PY - 2013 DA - 2013// TI - Gene dysregulation by histone variant H2A.Z in bladder cancer JO - Epigenetics Chromatin. VL - 6 UR - https://doi.org/10.1186/1756-8935-6-34 DO - 10.1186/1756-8935-6-34 ID - Kim2013 ER - TY - JOUR AU - Martinato, F. AU - Cesaroni, M. AU - Amati, B. AU - Guccione, E. PY - 2008 DA - 2008// TI - Analysis of Myc-induced histone modifications on target chromatin JO - PLoS ONE VL - 3 UR - https://doi.org/10.1371/journal.pone.0003650 DO - 10.1371/journal.pone.0003650 ID - Martinato2008 ER - TY - JOUR AU - Hardy, S. AU - Jacques, P. E. AU - Gevry, N. AU - Forest, A. AU - Fortin, M. E. AU - Laflamme, L. PY - 2009 DA - 2009// TI - The euchromatic and heterochromatic landscapes are shaped by antagonizing effects of transcription on H2A.Z deposition JO - PLoS Genet. VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000687 DO - 10.1371/journal.pgen.1000687 ID - Hardy2009 ER - TY - JOUR AU - Lashgari, A. AU - Millau, J. F. AU - Jacques, P. E. AU - Gaudreau, L. PY - 2017 DA - 2017// TI - Global inhibition of transcription causes an increase in histone H2A.Z incorporation within gene bodies JO - Nucleic Acids Res VL - 45 UR - https://doi.org/10.1093/nar/gkx879 DO - 10.1093/nar/gkx879 ID - Lashgari2017 ER - TY - JOUR AU - Weber, C. M. AU - Ramachandran, S. AU - Henikoff, S. PY - 2014 DA - 2014// TI - Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase JO - Mol Cell VL - 53 UR - https://doi.org/10.1016/j.molcel.2014.02.014 DO - 10.1016/j.molcel.2014.02.014 ID - Weber2014 ER - TY - JOUR AU - Day, D. S. AU - Zhang, B. AU - Stevens, S. M. AU - Ferrari, F. AU - Larschan, E. N. AU - Park, P. J. PY - 2016 DA - 2016// TI - Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types JO - Genome Biol VL - 17 UR - https://doi.org/10.1186/s13059-016-0984-2 DO - 10.1186/s13059-016-0984-2 ID - Day2016 ER - TY - JOUR AU - Bargaje, R. AU - Alam, M. P. AU - Patowary, A. AU - Sarkar, M. AU - Ali, T. AU - Gupta, S. PY - 2012 DA - 2012// TI - Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain JO - Nucleic Acids Res. VL - 40 UR - https://doi.org/10.1093/nar/gks665 DO - 10.1093/nar/gks665 ID - Bargaje2012 ER - TY - JOUR AU - Guillemette, B. AU - Bataille, A. R. AU - Gevry, N. AU - Adam, M. AU - Blanchette, M. AU - Robert, F. PY - 2005 DA - 2005// TI - Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning JO - PLoS Biol. VL - 3 UR - https://doi.org/10.1371/journal.pbio.0030384 DO - 10.1371/journal.pbio.0030384 ID - Guillemette2005 ER - TY - JOUR AU - Zhang, H. AU - Roberts, D. N. AU - Cairns, B. R. PY - 2005 DA - 2005// TI - Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss JO - Cell VL - 123 UR - https://doi.org/10.1016/j.cell.2005.08.036 DO - 10.1016/j.cell.2005.08.036 ID - Zhang2005 ER - TY - JOUR AU - Jin, C. AU - Zang, C. AU - Wei, G. AU - Cui, K. AU - Peng, W. AU - Zhao, K. PY - 2009 DA - 2009// TI - H3.3/H2A.Z double variant-containing nucleosomes mark ‘nucleosome-free regions’ of active promoters and other regulatory regions JO - Nat Genet VL - 41 UR - https://doi.org/10.1038/ng.409 DO - 10.1038/ng.409 ID - Jin2009 ER - TY - JOUR AU - Hu, G. AU - Cui, K. AU - Northrup, D. AU - Liu, C. AU - Wang, C. AU - Tang, Q. PY - 2013 DA - 2013// TI - H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation JO - Cell Stem Cell. VL - 12 UR - https://doi.org/10.1016/j.stem.2012.11.003 DO - 10.1016/j.stem.2012.11.003 ID - Hu2013 ER - TY - JOUR AU - Dai, X. AU - Bai, Y. AU - Zhao, L. AU - Dou, X. AU - Liu, Y. AU - Wang, L. PY - 2017 DA - 2017// TI - H2A.Z Represses gene expression by modulating promoter nucleosome structure and enhancer histone modifications in arabidopsis JO - Mol Plant VL - 10 UR - https://doi.org/10.1016/j.molp.2017.09.007 DO - 10.1016/j.molp.2017.09.007 ID - Dai2017 ER - TY - JOUR AU - Johnson, T. A. AU - Chereji, R. V. AU - Stavreva, D. A. AU - Morris, S. A. AU - Hager, G. L. AU - Clark, D. J. PY - 2018 DA - 2018// TI - Conventional and pioneer modes of glucocorticoid receptor interaction with enhancer chromatin in vivo JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gkx1044 DO - 10.1093/nar/gkx1044 ID - Johnson2018 ER - TY - JOUR AU - Brunelle, M. AU - Nordell Markovits, A. AU - Rodrigue, S. AU - Lupien, M. AU - Jacques, P. E. AU - Gevry, N. PY - 2015 DA - 2015// TI - The histone variant H2A.Z is an important regulator of enhancer activity JO - Nucleic Acids Res. VL - 43 UR - https://doi.org/10.1093/nar/gkv825 DO - 10.1093/nar/gkv825 ID - Brunelle2015 ER - TY - JOUR AU - Marques, M. AU - Laflamme, L. AU - Gaudreau, L. PY - 2013 DA - 2013// TI - Estrogen receptor alpha can selectively repress dioxin receptor-mediated gene expression by targeting DNA methylation JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt595 DO - 10.1093/nar/gkt595 ID - Marques2013 ER - TY - JOUR AU - Swaminathan, J. AU - Baxter, E. M. AU - Corces, V. G. PY - 2005 DA - 2005// TI - The role of histone H2Av variant replacement and histone H4 acetylation in the establishment of Drosophila heterochromatin JO - Genes Dev VL - 19 UR - https://doi.org/10.1101/gad.1259105 DO - 10.1101/gad.1259105 ID - Swaminathan2005 ER - TY - JOUR AU - Kotova, E. AU - Lodhi, N. AU - Jarnik, M. AU - Pinnola, A. D. AU - Ji, Y. AU - Tulin, A. V. PY - 2011 DA - 2011// TI - Drosophila histone H2A variant (H2Av) controls poly(ADP-ribose) polymerase 1 (PARP1) activation in chromatin JO - Proc Natl Acad Sci USA. VL - 108 UR - https://doi.org/10.1073/pnas.1019644108 DO - 10.1073/pnas.1019644108 ID - Kotova2011 ER - TY - JOUR AU - Leach, T. J. AU - Mazzeo, M. AU - Chotkowski, H. L. AU - Madigan, J. P. AU - Wotring, M. G. AU - Glaser, R. L. PY - 2000 DA - 2000// TI - Histone H2A.Z is widely but nonrandomly distributed in chromosomes of Drosophila melanogaster JO - J Biol Chem. VL - 275 UR - https://doi.org/10.1074/jbc.m910206199 DO - 10.1074/jbc.m910206199 ID - Leach2000 ER - TY - JOUR AU - Ismail, I. H. AU - Hendzel, M. J. PY - 2008 DA - 2008// TI - The gamma-H2A.X: is it just a surrogate marker of double-strand breaks or much more? JO - Environ Mol Mutagen VL - 49 UR - https://doi.org/10.1002/em.20358 DO - 10.1002/em.20358 ID - Ismail2008 ER - TY - JOUR AU - Madigan, J. P. AU - Chotkowski, H. L. AU - Glaser, R. L. PY - 2002 DA - 2002// TI - DNA double-strand break-induced phosphorylation of Drosophila histone variant H2Av helps prevent radiation-induced apoptosis JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf496 DO - 10.1093/nar/gkf496 ID - Madigan2002 ER - TY - JOUR AU - Kusch, T. AU - Florens, L. AU - Macdonald, W. H. AU - Swanson, S. K. AU - Glaser, R. L. AU - Yates, J. R. PY - 2004 DA - 2004// TI - Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions JO - Science VL - 306 UR - https://doi.org/10.1126/science.1103455 DO - 10.1126/science.1103455 ID - Kusch2004 ER - TY - JOUR AU - Flegel, K. AU - Grushko, O. AU - Bolin, K. AU - Griggs, E. AU - Buttitta, L. PY - 2016 DA - 2016// TI - Roles for the histone modifying and exchange complex NuA4 in cell cycle progression in drosophila melanogaster JO - Genetics VL - 203 UR - https://doi.org/10.1534/genetics.116.188581 DO - 10.1534/genetics.116.188581 ID - Flegel2016 ER - TY - JOUR AU - Krogan, N. J. AU - Keogh, M. C. AU - Datta, N. AU - Sawa, C. AU - Ryan, O. W. AU - Ding, H. PY - 2003 DA - 2003// TI - A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1 JO - Mol Cell VL - 12 UR - https://doi.org/10.1016/S1097-2765(03)00497-0 DO - 10.1016/S1097-2765(03)00497-0 ID - Krogan2003 ER - TY - JOUR AU - Kobor, M. S. AU - Venkatasubrahmanyam, S. AU - Meneghini, M. D. AU - Gin, J. W. AU - Jennings, J. L. AU - Link, A. J. PY - 2004 DA - 2004// TI - A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2AZ into euchromatin JO - PLoS Biol. VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020131 DO - 10.1371/journal.pbio.0020131 ID - Kobor2004 ER - TY - JOUR AU - Mizuguchi, G. AU - Shen, X. AU - Landry, J. AU - Wu, W. H. AU - Sen, S. AU - Wu, C. PY - 2004 DA - 2004// TI - ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex JO - Science VL - 303 UR - https://doi.org/10.1126/science.1090701 DO - 10.1126/science.1090701 ID - Mizuguchi2004 ER - TY - JOUR AU - Kim, H. S. AU - Vanoosthuyse, V. AU - Fillingham, J. AU - Roguev, A. AU - Watt, S. AU - Kislinger, T. PY - 2009 DA - 2009// TI - An acetylated form of histone H2AZ regulates chromosome architecture in Schizosaccharomyces pombe JO - Nat Struct Mol Biol. VL - 16 UR - https://doi.org/10.1038/nsmb.1688 DO - 10.1038/nsmb.1688 ID - Kim2009 ER - TY - JOUR AU - Altaf, M. AU - Auger, A. AU - Monnet-Saksouk, J. AU - Brodeur, J. AU - Piquet, S. AU - Cramet, M. PY - 2010 DA - 2010// TI - NuA4-dependent acetylation of nucleosomal histones H4 and H2A directly stimulates incorporation of H2AZ by the SWR1 complex JO - J Biol Chem. VL - 285 UR - https://doi.org/10.1074/jbc.m110.117069 DO - 10.1074/jbc.m110.117069 ID - Altaf2010 ER - TY - JOUR AU - Luk, E. AU - Ranjan, A. AU - Fitzgerald, P. C. AU - Mizuguchi, G. AU - Huang, Y. AU - Wei, D. PY - 2010 DA - 2010// TI - Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome JO - Cell. VL - 143 UR - https://doi.org/10.1016/j.cell.2010.10.019 DO - 10.1016/j.cell.2010.10.019 ID - Luk2010 ER - TY - JOUR AU - Wu, W. H. AU - Alami, S. AU - Luk, E. AU - Wu, C. H. AU - Sen, S. AU - Mizuguchi, G. PY - 2005 DA - 2005// TI - Swc2 is a widely conserved H2AZ-binding module essential for ATP-dependent histone exchange JO - Nat Struct Mol Biol VL - 12 UR - https://doi.org/10.1038/nsmb1023 DO - 10.1038/nsmb1023 ID - Wu2005 ER - TY - JOUR AU - Nguyen, V. Q. AU - Ranjan, A. AU - Stengel, F. AU - Wei, D. AU - Aebersold, R. AU - Wu, C. PY - 2013 DA - 2013// TI - Molecular architecture of the ATP-dependent chromatin-remodeling complex SWR1 JO - Cell VL - 154 UR - https://doi.org/10.1016/j.cell.2013.08.018 DO - 10.1016/j.cell.2013.08.018 ID - Nguyen2013 ER - TY - JOUR AU - Watanabe, S. AU - Tan, D. AU - Lakshminarasimhan, M. AU - Washburn, M. P. AU - Hong, E. J. AU - Walz, T. PY - 2015 DA - 2015// TI - Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C JO - Nat Commun. VL - 6 UR - https://doi.org/10.1038/ncomms8108 DO - 10.1038/ncomms8108 ID - Watanabe2015 ER - TY - JOUR AU - Willhoft, O. l. i. v. e. r. AU - Ghoneim, M. o. h. a. m. e. d. AU - Lin, C. h. i. a. -. L. i. a. n. g. AU - Chua, E. u. g. e. n. e. Y. D. AU - Wilkinson, M. a. r. t. i. n. AU - Chaban, Y. u. r. i. y. AU - Ayala, R. a. f. a. e. l. AU - McCormack, E. l. i. z. a. b. e. t. h. A. AU - Ocloo, L. o. r. r. a. i. n. e. AU - Rueda, D. a. v. i. d. S. AU - Wigley, D. a. l. e. B. PY - 2018 DA - 2018// TI - Structure and dynamics of the yeast SWR1-nucleosome complex JO - Science VL - 362 UR - https://doi.org/10.1126/science.aat7716 DO - 10.1126/science.aat7716 ID - Willhoft2018 ER - TY - JOUR AU - Hong, J. AU - Feng, H. AU - Wang, F. AU - Ranjan, A. AU - Chen, J. AU - Jiang, J. PY - 2014 DA - 2014// TI - The catalytic subunit of the SWR1 remodeler is a histone chaperone for the H2A.Z-H2B dimer JO - Mol Cell. VL - 53 UR - https://doi.org/10.1016/j.molcel.2014.01.010 DO - 10.1016/j.molcel.2014.01.010 ID - Hong2014 ER - TY - JOUR AU - Auger, A. AU - Galarneau, L. AU - Altaf, M. AU - Nourani, A. AU - Doyon, Y. AU - Utley, R. T. PY - 2008 DA - 2008// TI - Eaf1 is the platform for NuA4 molecular assembly that evolutionarily links chromatin acetylation to ATP-dependent exchange of histone H2A variants JO - Mol Cell Biol VL - 28 UR - https://doi.org/10.1128/MCB.01755-07 DO - 10.1128/MCB.01755-07 ID - Auger2008 ER - TY - JOUR AU - Keogh, M. C. AU - Mennella, T. A. AU - Sawa, C. AU - Berthelet, S. AU - Krogan, N. J. AU - Wolek, A. PY - 2006 DA - 2006// TI - The Saccharomyces cerevisiae histone H2A variant Htz1 is acetylated by NuA4 JO - Genes Dev VL - 20 UR - https://doi.org/10.1101/gad.1388106 DO - 10.1101/gad.1388106 ID - Keogh2006 ER - TY - JOUR AU - Choi, J. AU - Heo, K. AU - An, W. PY - 2009 DA - 2009// TI - Cooperative action of TIP48 and TIP49 in H2A.Z exchange catalyzed by acetylation of nucleosomal H2A JO - Nucleic Acids Res. VL - 37 UR - https://doi.org/10.1093/nar/gkp660 DO - 10.1093/nar/gkp660 ID - Choi2009 ER - TY - JOUR AU - Ranjan, A. AU - Mizuguchi, G. AU - FitzGerald, P. C. AU - Wei, D. AU - Wang, F. AU - Huang, Y. PY - 2013 DA - 2013// TI - Nucleosome-free region dominates histone acetylation in targeting SWR1 to promoters for H2A.Z replacement JO - Cell. VL - 154 UR - https://doi.org/10.1016/j.cell.2013.08.005 DO - 10.1016/j.cell.2013.08.005 ID - Ranjan2013 ER - TY - JOUR AU - Osada, S. AU - Sutton, A. AU - Muster, N. AU - Brown, C. E. AU - Yates, J. R. AU - Sternglanz, R. PY - 2001 DA - 2001// TI - The yeast SAS (something about silencing) protein complex contains a MYST-type putative acetyltransferase and functions with chromatin assembly factor ASF1 JO - Genes Dev VL - 15 UR - https://doi.org/10.1101/gad.907201 DO - 10.1101/gad.907201 ID - Osada2001 ER - TY - JOUR AU - Ruhl, D. D. AU - Jin, J. AU - Cai, Y. AU - Swanson, S. AU - Florens, L. AU - Washburn, M. P. PY - 2006 DA - 2006// TI - Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes JO - Biochemistry. VL - 45 UR - https://doi.org/10.1021/bi060043d DO - 10.1021/bi060043d ID - Ruhl2006 ER - TY - JOUR AU - Cai, Y. AU - Jin, J. AU - Tomomori-Sato, C. AU - Sato, S. AU - Sorokina, I. AU - Parmely, T. J. PY - 2003 DA - 2003// TI - Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.C300389200 DO - 10.1074/jbc.C300389200 ID - Cai2003 ER - TY - JOUR AU - Doyon, Y. AU - Selleck, W. AU - Lane, W. S. AU - Tan, S. AU - Cote, J. PY - 2004 DA - 2004// TI - Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans JO - Mol Cell Biol VL - 24 UR - https://doi.org/10.1128/MCB.24.5.1884-1896.2004 DO - 10.1128/MCB.24.5.1884-1896.2004 ID - Doyon2004 ER - TY - JOUR AU - Cai, Y. AU - Jin, J. AU - Florens, L. AU - Swanson, S. K. AU - Kusch, T. AU - Li, B. PY - 2005 DA - 2005// TI - The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M500001200 DO - 10.1074/jbc.M500001200 ID - Cai2005 ER - TY - JOUR AU - Robert, F. AU - Hardy, S. AU - Nagy, Z. AU - Baldeyron, C. AU - Murr, R. AU - Dery, U. PY - 2006 DA - 2006// TI - The transcriptional histone acetyltransferase cofactor TRRAP associates with the MRN repair complex and plays a role in DNA double-strand break repair JO - Mol Cell Biol VL - 26 UR - https://doi.org/10.1128/MCB.26.2.402-412.2006 DO - 10.1128/MCB.26.2.402-412.2006 ID - Robert2006 ER - TY - JOUR AU - Frank, S. R. AU - Parisi, T. AU - Taubert, S. AU - Fernandez, P. AU - Fuchs, M. AU - Chan, H. M. PY - 2003 DA - 2003// TI - MYC recruits the TIP60 histone acetyltransferase complex to chromatin JO - EMBO Rep VL - 4 UR - https://doi.org/10.1038/sj.embor.embor861 DO - 10.1038/sj.embor.embor861 ID - Frank2003 ER - TY - JOUR AU - Jeong, K. W. AU - Kim, K. AU - Situ, A. J. AU - Ulmer, T. S. AU - An, W. AU - Stallcup, M. R. PY - 2011 DA - 2011// TI - Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation JO - Nat Struct Mol Biol VL - 18 UR - https://doi.org/10.1038/nsmb.2153 DO - 10.1038/nsmb.2153 ID - Jeong2011 ER - TY - JOUR AU - Slupianek, A. AU - Yerrum, S. AU - Safadi, F. F. AU - Monroy, M. A. PY - 2010 DA - 2010// TI - The chromatin remodeling factor SRCAP modulates expression of prostate specific antigen and cellular proliferation in prostate cancer cells JO - J Cell Physiol VL - 224 UR - https://doi.org/10.1002/jcp.22132 DO - 10.1002/jcp.22132 ID - Slupianek2010 ER - TY - JOUR AU - Ye, B. AU - Liu, B. AU - Yang, L. AU - Huang, G. AU - Hao, L. AU - Xia, P. PY - 2017 DA - 2017// TI - Suppression of SRCAP chromatin remodelling complex and restriction of lymphoid lineage commitment by Pcid2 JO - Nat Commun. VL - 8 UR - https://doi.org/10.1038/s41467-017-01788-7 DO - 10.1038/s41467-017-01788-7 ID - Ye2017 ER - TY - JOUR AU - Heisel, S. AU - Habel, N. C. AU - Schuetz, N. AU - Ruggieri, A. AU - Meese, E. PY - 2010 DA - 2010// TI - The YEATS family member GAS41 interacts with the general transcription factor TFIIF JO - BMC Mol Biol VL - 11 UR - https://doi.org/10.1186/1471-2199-11-53 DO - 10.1186/1471-2199-11-53 ID - Heisel2010 ER - TY - JOUR AU - Ito, S. a. y. a. AU - Kayukawa, N. a. r. u. h. i. r. o. AU - Ueda, T. a. k. a. s. h. i. AU - Taniguchi, H. i. d. e. f. u. m. i. AU - Morioka, Y. u. k. a. k. o. AU - Hongo, F. u. m. i. y. a. AU - Ukimura, O. s. a. m. u. PY - 2018 DA - 2018// TI - MRGBP promotes AR-mediated transactivation of KLK3 and TMPRSS2 via acetylation of histone H2A.Z in prostate cancer cells JO - Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms VL - 1861 UR - https://doi.org/10.1016/j.bbagrm.2018.07.014 DO - 10.1016/j.bbagrm.2018.07.014 ID - Ito2018 ER - TY - JOUR AU - Cho, H. J. AU - Li, H. AU - Linhares, B. M. AU - Kim, E. AU - Ndoj, J. AU - Miao, H. PY - 2018 DA - 2018// TI - GAS41 recognizes diacetylated histone H3 through a bivalent binding mode JO - ACS Chem Biol VL - 13 UR - https://doi.org/10.1021/acschembio.8b00674 DO - 10.1021/acschembio.8b00674 ID - Cho2018 ER - TY - JOUR AU - Klein, B. J. AU - Ahmad, S. AU - Vann, K. R. AU - Andrews, F. H. AU - Mayo, Z. A. AU - Bourriquen, G. PY - 2018 DA - 2018// TI - Yaf9 subunit of the NuA4 and SWR1 complexes targets histone H3K27ac through its YEATS domain JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gkx1151 DO - 10.1093/nar/gkx1151 ID - Klein2018 ER - TY - JOUR AU - Hsu, C. C. AU - Zhao, D. AU - Shi, J. AU - Peng, D. AU - Guan, H. AU - Li, Y. PY - 2018 DA - 2018// TI - Gas41 links histone acetylation to H2AZ deposition and maintenance of embryonic stem cell identity JO - Cell Discov. VL - 4 UR - https://doi.org/10.1038/s41421-018-0027-0 DO - 10.1038/s41421-018-0027-0 ID - Hsu2018 ER - TY - JOUR AU - Hsu, C. C. AU - Shi, J. AU - Yuan, C. AU - Zhao, D. AU - Jiang, S. AU - Lyu, J. PY - 2018 DA - 2018// TI - Recognition of histone acetylation by the GAS41 YEATS domain promotes H2A.Z deposition in non-small cell lung cancer JO - Genes Dev. VL - 32 UR - https://doi.org/10.1101/gad.303784.117 DO - 10.1101/gad.303784.117 ID - Hsu2018 ER - TY - JOUR AU - Wang, Y. AU - Jin, J. AU - Chung, M. W. H. AU - Feng, L. AU - Sun, H. AU - Hao, Q. PY - 2018 DA - 2018// TI - Identification of the YEATS domain of GAS41 as a pH-dependent reader of histone succinylation JO - Proc Natl Acad Sci USA VL - 115 UR - https://doi.org/10.1073/pnas.1717664115 DO - 10.1073/pnas.1717664115 ID - Wang2018 ER - TY - JOUR AU - Wang, A. Y. AU - Schulze, J. M. AU - Skordalakes, E. AU - Gin, J. W. AU - Berger, J. M. AU - Rine, J. PY - 2009 DA - 2009// TI - Asf1-like structure of the conserved Yaf9 YEATS domain and role in H2A.Z deposition and acetylation JO - Proc Natl Acad Sci U S A. VL - 106 UR - https://doi.org/10.1073/pnas.0906539106 DO - 10.1073/pnas.0906539106 ID - Wang2009 ER - TY - JOUR AU - Yen, K. AU - Vinayachandran, V. AU - Pugh, B. F. PY - 2013 DA - 2013// TI - SWR-C and INO80 chromatin remodelers recognize nucleosome-free regions near +1 nucleosomes JO - Cell VL - 154 UR - https://doi.org/10.1016/j.cell.2013.08.043 DO - 10.1016/j.cell.2013.08.043 ID - Yen2013 ER - TY - JOUR AU - Obri, A. AU - Ouararhni, K. AU - Papin, C. AU - Diebold, M. L. AU - Padmanabhan, K. AU - Marek, M. PY - 2014 DA - 2014// TI - ANP32E is a histone chaperone that removes H2AZ from chromatin JO - Nature VL - 505 UR - https://doi.org/10.1038/nature12922 DO - 10.1038/nature12922 ID - Obri2014 ER - TY - JOUR AU - Mao, Z. AU - Pan, L. AU - Wang, W. AU - Sun, J. AU - Shan, S. AU - Dong, Q. PY - 2014 DA - 2014// TI - Anp32e, a higher eukaryotic histone chaperone directs preferential recognition for H2A.Z JO - Cell Res. VL - 24 UR - https://doi.org/10.1038/cr.2014.30 DO - 10.1038/cr.2014.30 ID - Mao2014 ER - TY - JOUR AU - Shin, H. AU - He, M. AU - Yang, Z. AU - Jeon, Y. H. AU - Pfleger, J. AU - Sayed, D. PY - 2018 DA - 2018// TI - Transcriptional regulation mediated by H2A.Z via ANP32e-dependent inhibition of protein phosphatase 2A JO - Biochim Biophys Acta Gene Regul Mech. VL - 1861 UR - https://doi.org/10.1016/j.bbagrm.2018.03.002 DO - 10.1016/j.bbagrm.2018.03.002 ID - Shin2018 ER - TY - JOUR AU - Richard, M. AU - Yvert, G. PY - 2014 DA - 2014// TI - How does evolution tune biological noise? JO - Front Genet. VL - 5 UR - https://doi.org/10.3389/fgene.2014.00374 DO - 10.3389/fgene.2014.00374 ID - Richard2014 ER - TY - JOUR AU - Gallant-Behm, C. L. AU - Ramsey, M. R. AU - Bensard, C. L. AU - Nojek, I. AU - Tran, J. AU - Liu, M. PY - 2012 DA - 2012// TI - DeltaNp63alpha represses anti-proliferative genes via H2A.Z deposition JO - Genes Dev. VL - 26 UR - https://doi.org/10.1101/gad.198069.112 DO - 10.1101/gad.198069.112 ID - Gallant-Behm2012 ER - TY - JOUR AU - Vavra, K. J. AU - Allis, C. D. AU - Gorovsky, M. A. PY - 1982 DA - 1982// TI - Regulation of histone acetylation in Tetrahymena macro- and micronuclei JO - J Biol Chem VL - 257 ID - Vavra1982 ER - TY - JOUR AU - Bruce, K. AU - Myers, F. A. AU - Mantouvalou, E. AU - Lefevre, P. AU - Greaves, I. AU - Bonifer, C. PY - 2005 DA - 2005// TI - The replacement histone H2AZ in a hyperacetylated form is a feature of active genes in the chicken JO - Nucleic Acids Res. VL - 33 UR - https://doi.org/10.1093/nar/gki874 DO - 10.1093/nar/gki874 ID - Bruce2005 ER - TY - JOUR AU - Myers, F. A. AU - Lefevre, P. AU - Mantouvalou, E. AU - Bruce, K. AU - Lacroix, C. AU - Bonifer, C. PY - 2006 DA - 2006// TI - Developmental activation of the lysozyme gene in chicken macrophage cells is linked to core histone acetylation at its enhancer elements JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl543 DO - 10.1093/nar/gkl543 ID - Myers2006 ER - TY - JOUR AU - Cheng, X. AU - Auger, A. AU - Altaf, M. AU - Drouin, S. AU - Paquet, E. AU - Utley, R. T. PY - 2015 DA - 2015// TI - Eaf1 links the NuA4 histone acetyltransferase complex to Htz1 incorporation and regulation of purine biosynthesis JO - Eukaryot Cell VL - 14 UR - https://doi.org/10.1128/EC.00004-15 DO - 10.1128/EC.00004-15 ID - Cheng2015 ER - TY - JOUR AU - Mehta, M. AU - Braberg, H. AU - Wang, S. AU - Lozsa, A. AU - Shales, M. AU - Solache, A. PY - 2010 DA - 2010// TI - Individual lysine acetylations on the N terminus of Saccharomyces cerevisiae H2A.Z are highly but not differentially regulated JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.m110.185967 DO - 10.1074/jbc.m110.185967 ID - Mehta2010 ER - TY - JOUR AU - Chittuluru, J. R. AU - Chaban, Y. AU - Monnet-Saksouk, J. AU - Carrozza, M. J. AU - Sapountzi, V. AU - Selleck, W. PY - 2011 DA - 2011// TI - Structure and nucleosome interaction of the yeast NuA4 and Piccolo-NuA4 histone acetyltransferase complexes JO - Nat Struct Mol Biol VL - 18 UR - https://doi.org/10.1038/nsmb.2128 DO - 10.1038/nsmb.2128 ID - Chittuluru2011 ER - TY - JOUR AU - Rajagopalan, D. AU - Tirado-Magallanes, R. AU - Bhatia, S. S. AU - Teo, W. S. AU - Sian, S. AU - Hora, S. PY - 2018 DA - 2018// TI - TIP60 represses activation of endogenous retroviral elements JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gky659 DO - 10.1093/nar/gky659 ID - Rajagopalan2018 ER - TY - JOUR AU - Lin, Y. Y. AU - Qi, Y. AU - Lu, J. Y. AU - Pan, X. AU - Yuan, D. S. AU - Zhao, Y. PY - 2008 DA - 2008// TI - A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation JO - Genes Dev VL - 22 UR - https://doi.org/10.1101/gad.1679508 DO - 10.1101/gad.1679508 ID - Lin2008 ER - TY - JOUR AU - Link, S. AU - Spitzer, R. M. M. AU - Sana, M. AU - Torrado, M. AU - Volker-Albert, M. C. AU - Keilhauer, E. C. PY - 2018 DA - 2018// TI - PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex JO - Nat Commun. VL - 9 UR - https://doi.org/10.1038/s41467-018-06665-5 DO - 10.1038/s41467-018-06665-5 ID - Link2018 ER - TY - JOUR AU - Perell, G. T. AU - Mishra, N. K. AU - Sudhamalla, B. AU - Ycas, P. D. AU - Islam, K. AU - Pomerantz, W. C. K. PY - 2017 DA - 2017// TI - Specific acetylation patterns of H2AZ form transient interactions with the BPTF bromodomain JO - Biochemistry. VL - 56 UR - https://doi.org/10.1021/acs.biochem.7b00648 DO - 10.1021/acs.biochem.7b00648 ID - Perell2017 ER - TY - JOUR AU - Sarcinella, E. AU - Zuzarte, P. C. AU - Lau, P. N. AU - Draker, R. AU - Cheung, P. PY - 2007 DA - 2007// TI - Monoubiquitylation of H2AZ distinguishes its association with euchromatin or facultative heterochromatin JO - Mol Cell Biol. VL - 27 UR - https://doi.org/10.1128/mcb.00241-07 DO - 10.1128/mcb.00241-07 ID - Sarcinella2007 ER - TY - JOUR AU - O’Connor, H. F. AU - Lyon, N. AU - Leung, J. W. AU - Agarwal, P. AU - Swaim, C. D. AU - Miller, K. M. PY - 2015 DA - 2015// TI - Ubiquitin-activated interaction traps (UBAITs) identify E3 ligase binding partners JO - EMBO Rep VL - 16 UR - https://doi.org/10.15252/embr.201540620 DO - 10.15252/embr.201540620 ID - O’Connor2015 ER - TY - JOUR AU - Fukuto, A. AU - Ikura, M. AU - Ikura, T. AU - Sun, J. AU - Horikoshi, Y. AU - Shima, H. PY - 2018 DA - 2018// TI - SUMO modification system facilitates the exchange of histone variant H2A.Z-2 at DNA damage sites JO - Nucleus VL - 9 UR - https://doi.org/10.1080/19491034.2017.1395543 DO - 10.1080/19491034.2017.1395543 ID - Fukuto2018 ER - TY - JOUR AU - Binda, O. AU - Sevilla, A. AU - LeRoy, G. AU - Lemischka, I. R. AU - Garcia, B. A. AU - Richard, S. PY - 2013 DA - 2013// TI - SETD6 monomethylates H2AZ on lysine 7 and is required for the maintenance of embryonic stem cell self-renewal JO - Epigenetics VL - 8 UR - https://doi.org/10.4161/epi.23416 DO - 10.4161/epi.23416 ID - Binda2013 ER - TY - JOUR AU - Tsai, C. H. AU - Chen, Y. J. AU - Yu, C. J. AU - Tzeng, S. R. AU - Wu, I. C. AU - Kuo, W. H. PY - 2016 DA - 2016// TI - SMYD3-mediated H2A.Z.1 methylation promotes cell cycle and cancer proliferation JO - Cancer Res. VL - 76 UR - https://doi.org/10.1158/0008-5472.can-16-0500 DO - 10.1158/0008-5472.can-16-0500 ID - Tsai2016 ER - TY - JOUR AU - Fujimoto, S. AU - Seebart, C. AU - Guastafierro, T. AU - Prenni, J. AU - Caiafa, P. AU - Zlatanova, J. PY - 2012 DA - 2012// TI - Proteome analysis of protein partners to nucleosomes containing canonical H2A or the variant histones H2A.Z or H2A.X. JO - Biol Chem. VL - 393 UR - https://doi.org/10.1515/bc-2011-216 DO - 10.1515/bc-2011-216 ID - Fujimoto2012 ER - TY - JOUR AU - Punzeler, S. AU - Link, S. AU - Wagner, G. AU - Keilhauer, E. C. AU - Kronbeck, N. AU - Spitzer, R. M. PY - 2017 DA - 2017// TI - Multivalent binding of PWWP2A to H2A.Z regulates mitosis and neural crest differentiation JO - EMBO J VL - 36 UR - https://doi.org/10.15252/embj.201695757 DO - 10.15252/embj.201695757 ID - Punzeler2017 ER - TY - JOUR AU - Zhang, Y. AU - Ku, W. L. AU - Liu, S. AU - Cui, K. AU - Jin, W. AU - Tang, Q. PY - 2017 DA - 2017// TI - Genome-wide identification of histone H2A and histone variant H2A.Z-interacting proteins by bPPI-seq JO - Cell Res. VL - 27 UR - https://doi.org/10.1038/cr.2017.112 DO - 10.1038/cr.2017.112 ID - Zhang2017 ER - TY - JOUR AU - Kusakabe, M. AU - Oku, H. AU - Matsuda, R. AU - Hori, T. AU - Muto, A. AU - Igarashi, K. PY - 2016 DA - 2016// TI - Genetic complementation analysis showed distinct contributions of the N-terminal tail of H2A.Z to epigenetic regulations JO - Genes Cells. VL - 21 UR - https://doi.org/10.1111/gtc.12327 DO - 10.1111/gtc.12327 ID - Kusakabe2016 ER - TY - JOUR AU - Eberl, H. C. AU - Spruijt, C. G. AU - Kelstrup, C. D. AU - Vermeulen, M. AU - Mann, M. PY - 2013 DA - 2013// TI - A map of general and specialized chromatin readers in mouse tissues generated by label-free interaction proteomics JO - Mol Cell VL - 49 UR - https://doi.org/10.1016/j.molcel.2012.10.026 DO - 10.1016/j.molcel.2012.10.026 ID - Eberl2013 ER - TY - JOUR AU - Garay, P. M. AU - Wallner, M. A. AU - Iwase, S. PY - 2016 DA - 2016// TI - Yin-yang actions of histone methylation regulatory complexes in the brain JO - Epigenomics VL - 8 UR - https://doi.org/10.2217/epi-2016-0090 DO - 10.2217/epi-2016-0090 ID - Garay2016 ER - TY - JOUR AU - Raisner, R. M. AU - Hartley, P. D. AU - Meneghini, M. D. AU - Bao, M. Z. AU - Liu, C. L. AU - Schreiber, S. L. PY - 2005 DA - 2005// TI - Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin JO - Cell. VL - 123 UR - https://doi.org/10.1016/j.cell.2005.10.002 DO - 10.1016/j.cell.2005.10.002 ID - Raisner2005 ER - TY - JOUR AU - Barski, A. AU - Cuddapah, S. AU - Cui, K. AU - Roh, T. Y. AU - Schones, D. E. AU - Wang, Z. PY - 2007 DA - 2007// TI - High-resolution profiling of histone methylations in the human genome JO - Cell VL - 129 UR - https://doi.org/10.1016/j.cell.2007.05.009 DO - 10.1016/j.cell.2007.05.009 ID - Barski2007 ER - TY - JOUR AU - Schones, D. E. AU - Cui, K. AU - Cuddapah, S. AU - Roh, T. Y. AU - Barski, A. AU - Wang, Z. PY - 2008 DA - 2008// TI - Dynamic regulation of nucleosome positioning in the human genome JO - Cell VL - 132 UR - https://doi.org/10.1016/j.cell.2008.02.022 DO - 10.1016/j.cell.2008.02.022 ID - Schones2008 ER - TY - JOUR AU - Chen, J. AU - Miller, A. AU - Kirchmaier, A. L. AU - Irudayaraj, J. M. PY - 2012 DA - 2012// TI - Single-molecule tools elucidate H2A.Z nucleosome composition JO - J Cell Sci. VL - 125 UR - https://doi.org/10.1242/jcs.101592 DO - 10.1242/jcs.101592 ID - Chen2012 ER - TY - JOUR AU - Won, K. J. AU - Choi, I. AU - LeRoy, G. AU - Zee, B. M. AU - Sidoli, S. AU - Gonzales-Cope, M. PY - 2015 DA - 2015// TI - Proteogenomics analysis reveals specific genomic orientations of distal regulatory regions composed by non-canonical histone variants JO - Epigenetics Chromatin VL - 8 UR - https://doi.org/10.1186/s13072-015-0005-9 DO - 10.1186/s13072-015-0005-9 ID - Won2015 ER - TY - JOUR AU - Yao, F. AU - Yu, P. AU - Li, Y. AU - Yuan, X. AU - Li, Z. AU - Zhang, T. PY - 2018 DA - 2018// TI - Histone variant H2A.Z is required for the maintenance of smooth muscle cell identity as revealed by single-cell transcriptomics JO - Circulation. VL - 138 UR - https://doi.org/10.1161/circulationaha.117.033114 DO - 10.1161/circulationaha.117.033114 ID - Yao2018 ER - TY - JOUR AU - Jeronimo, C. AU - Watanabe, S. AU - Kaplan, C. D. AU - Peterson, C. L. AU - Robert, F. PY - 2015 DA - 2015// TI - The histone chaperones FACT and Spt6 restrict H2A.Z from intragenic locations JO - Mol Cell VL - 58 UR - https://doi.org/10.1016/j.molcel.2015.03.030 DO - 10.1016/j.molcel.2015.03.030 ID - Jeronimo2015 ER - TY - JOUR AU - Rach, E. A. AU - Winter, D. R. AU - Benjamin, A. M. AU - Corcoran, D. L. AU - Ni, T. AU - Zhu, J. PY - 2011 DA - 2011// TI - Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level JO - PLoS Genet VL - 7 UR - https://doi.org/10.1371/journal.pgen.1001274 DO - 10.1371/journal.pgen.1001274 ID - Rach2011 ER - TY - JOUR AU - Albert, I. AU - Mavrich, T. N. AU - Tomsho, L. P. AU - Qi, J. AU - Zanton, S. J. AU - Schuster, S. C. PY - 2007 DA - 2007// TI - Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome JO - Nature. VL - 446 UR - https://doi.org/10.1038/nature05632 DO - 10.1038/nature05632 ID - Albert2007 ER - TY - JOUR AU - Mavrich, T. N. AU - Jiang, C. AU - Ioshikhes, I. P. AU - Li, X. AU - Venters, B. J. AU - Zanton, S. J. PY - 2008 DA - 2008// TI - Nucleosome organization in the Drosophila genome JO - Nature VL - 453 UR - https://doi.org/10.1038/nature06929 DO - 10.1038/nature06929 ID - Mavrich2008 ER - TY - JOUR AU - Ernst, J. AU - Kheradpour, P. AU - Mikkelsen, T. S. AU - Shoresh, N. AU - Ward, L. D. AU - Epstein, C. B. PY - 2011 DA - 2011// TI - Mapping and analysis of chromatin state dynamics in nine human cell types JO - Nature VL - 473 UR - https://doi.org/10.1038/nature09906 DO - 10.1038/nature09906 ID - Ernst2011 ER - TY - JOUR AU - Cauchy, P. AU - Koch, F. AU - Andrau, J. C. PY - 2017 DA - 2017// TI - Two possible modes of pioneering associated with combinations of H2A.Z and p300/CBP at nucleosome-occupied enhancers JO - Transcription. VL - 8 UR - https://doi.org/10.1080/21541264.2017.1291395 DO - 10.1080/21541264.2017.1291395 ID - Cauchy2017 ER - TY - JOUR AU - Jin, C. AU - Felsenfeld, G. PY - 2007 DA - 2007// TI - Nucleosome stability mediated by histone variants H3.3 and H2A.Z JO - Genes Dev. VL - 21 UR - https://doi.org/10.1101/gad.1547707 DO - 10.1101/gad.1547707 ID - Jin2007 ER - TY - JOUR AU - Soboleva, T. A. AU - Nekrasov, M. AU - Ryan, D. P. AU - Tremethick, D. J. PY - 2014 DA - 2014// TI - Histone variants at the transcription start-site JO - Trends Genet VL - 30 UR - https://doi.org/10.1016/j.tig.2014.03.002 DO - 10.1016/j.tig.2014.03.002 ID - Soboleva2014 ER - TY - JOUR AU - Henikoff, S. AU - Henikoff, J. G. AU - Sakai, A. AU - Loeb, G. B. AU - Ahmad, K. PY - 2009 DA - 2009// TI - Genome-wide profiling of salt fractions maps physical properties of chromatin JO - Genome Res VL - 19 UR - https://doi.org/10.1101/gr.087619.108 DO - 10.1101/gr.087619.108 ID - Henikoff2009 ER - TY - JOUR AU - Xi, Y. AU - Yao, J. AU - Chen, R. AU - Li, W. AU - He, X. PY - 2011 DA - 2011// TI - Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.117101.110 DO - 10.1101/gr.117101.110 ID - Xi2011 ER - TY - JOUR AU - Suto, R. K. AU - Clarkson, M. J. AU - Tremethick, D. J. AU - Luger, K. PY - 2000 DA - 2000// TI - Crystal structure of a nucleosome core particle containing the variant histone H2A.Z JO - Nat Struct Biol. VL - 7 UR - https://doi.org/10.1038/81971 DO - 10.1038/81971 ID - Suto2000 ER - TY - JOUR AU - Bernstein, E. AU - Hake, S. B. PY - 2006 DA - 2006// TI - The nucleosome: a little variation goes a long way JO - Biochem Cell Biol VL - 84 UR - https://doi.org/10.1139/o06-085 DO - 10.1139/o06-085 ID - Bernstein2006 ER - TY - JOUR AU - Abbott, D. W. AU - Ivanova, V. S. AU - Wang, X. AU - Bonner, W. M. AU - Ausio, J. PY - 2001 DA - 2001// TI - Characterization of the stability and folding of H2A.Z chromatin particles: implications for transcriptional activation JO - J Biol Chem. VL - 276 UR - https://doi.org/10.1074/jbc.m108217200 DO - 10.1074/jbc.m108217200 ID - Abbott2001 ER - TY - JOUR AU - Horikoshi, N. a. o. k. i. AU - Arimura, Y. a. s. u. h. i. r. o. AU - Taguchi, H. i. r. o. y. u. k. i. AU - Kurumizaka, H. i. t. o. s. h. i. PY - 2016 DA - 2016// TI - Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A JO - Open Biology VL - 6 UR - https://doi.org/10.1098/rsob.160127 DO - 10.1098/rsob.160127 ID - Horikoshi2016 ER - TY - JOUR AU - Nekrasov, M. AU - Amrichova, J. AU - Parker, B. J. AU - Soboleva, T. A. AU - Jack, C. AU - Williams, R. PY - 2012 DA - 2012// TI - Histone H2AZ inheritance during the cell cycle and its impact on promoter organization and dynamics JO - Nat Struct Mol Biol. VL - 19 UR - https://doi.org/10.1038/nsmb.2424 DO - 10.1038/nsmb.2424 ID - Nekrasov2012 ER - TY - JOUR AU - Nekrasov, M. AU - Soboleva, T. A. AU - Jack, C. AU - Tremethick, D. J. PY - 2013 DA - 2013// TI - Histone variant selectivity at the transcription start site: H2A.Z or H2A.Lap1 JO - Nucleus. VL - 4 UR - https://doi.org/10.4161/nucl.26862 DO - 10.4161/nucl.26862 ID - Nekrasov2013 ER - TY - JOUR AU - Thakar, A. AU - Gupta, P. AU - Ishibashi, T. AU - Finn, R. AU - Silva-Moreno, B. AU - Uchiyama, S. PY - 2009 DA - 2009// TI - H2A.Z and H33 histone variants affect nucleosome structure: biochemical and biophysical studies JO - Biochemistry VL - 48 UR - https://doi.org/10.1021/bi901129e DO - 10.1021/bi901129e ID - Thakar2009 ER - TY - JOUR AU - Weber, C. M. AU - Henikoff, J. G. AU - Henikoff, S. PY - 2010 DA - 2010// TI - H2A.Z nucleosomes enriched over active genes are homotypic JO - Nat Struct Mol Biol. VL - 17 UR - https://doi.org/10.1038/nsmb.1926 DO - 10.1038/nsmb.1926 ID - Weber2010 ER - TY - JOUR AU - Park, Y. J. AU - Dyer, P. N. AU - Tremethick, D. J. AU - Luger, K. PY - 2004 DA - 2004// TI - A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M313152200 DO - 10.1074/jbc.M313152200 ID - Park2004 ER - TY - JOUR AU - Thambirajah, A. A. AU - Dryhurst, D. AU - Ishibashi, T. AU - Li, A. AU - Maffey, A. H. AU - Ausio, J. PY - 2006 DA - 2006// TI - H2A.Z stabilizes chromatin in a way that is dependent on core histone acetylation JO - J Biol Chem. VL - 281 UR - https://doi.org/10.1074/jbc.m601975200 DO - 10.1074/jbc.m601975200 ID - Thambirajah2006 ER - TY - JOUR AU - Ishibashi, T. AU - Dryhurst, D. AU - Rose, K. L. AU - Shabanowitz, J. AU - Hunt, D. F. AU - Ausio, J. PY - 2009 DA - 2009// TI - Acetylation of vertebrate H2A.Z and its effect on the structure of the nucleosome JO - Biochemistry. VL - 48 UR - https://doi.org/10.1021/bi900196c DO - 10.1021/bi900196c ID - Ishibashi2009 ER - TY - JOUR AU - Lantermann, A. B. AU - Straub, T. AU - Stralfors, A. AU - Yuan, G. C. AU - Ekwall, K. AU - Korber, P. PY - 2010 DA - 2010// TI - Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae JO - Nat Struct Mol Biol VL - 17 UR - https://doi.org/10.1038/nsmb.1741 DO - 10.1038/nsmb.1741 ID - Lantermann2010 ER - TY - JOUR AU - Zilberman, D. AU - Coleman-Derr, D. AU - Ballinger, T. AU - Henikoff, S. PY - 2008 DA - 2008// TI - Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks JO - Nature. VL - 456 UR - https://doi.org/10.1038/nature07324 DO - 10.1038/nature07324 ID - Zilberman2008 ER - TY - JOUR AU - Conerly, M. L. AU - Teves, S. S. AU - Diolaiti, D. AU - Ulrich, M. AU - Eisenman, R. N. AU - Henikoff, S. PY - 2010 DA - 2010// TI - Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis JO - Genome Res. VL - 20 UR - https://doi.org/10.1101/gr.106542.110 DO - 10.1101/gr.106542.110 ID - Conerly2010 ER - TY - JOUR AU - Edwards, J. R. AU - O’Donnell, A. H. AU - Rollins, R. A. AU - Peckham, H. E. AU - Lee, C. AU - Milekic, M. H. PY - 2010 DA - 2010// TI - Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns JO - Genome Res VL - 20 UR - https://doi.org/10.1101/gr.101535.109 DO - 10.1101/gr.101535.109 ID - Edwards2010 ER - TY - JOUR AU - Zemach, A. AU - McDaniel, I. E. AU - Silva, P. AU - Zilberman, D. PY - 2010 DA - 2010// TI - Genome-wide evolutionary analysis of eukaryotic DNA methylation JO - Science VL - 328 UR - https://doi.org/10.1126/science.1186366 DO - 10.1126/science.1186366 ID - Zemach2010 ER - TY - JOUR AU - Murphy, P. J. AU - Wu, S. F. AU - James, C. R. AU - Wike, C. L. AU - Cairns, B. R. PY - 2018 DA - 2018// TI - Placeholder nucleosomes underlie germline-to-embryo DNA methylation reprogramming JO - Cell VL - 172 UR - https://doi.org/10.1016/j.cell.2018.01.022 DO - 10.1016/j.cell.2018.01.022 ID - Murphy2018 ER - TY - JOUR AU - Yang, X. AU - Noushmehr, H. AU - Han, H. AU - Andreu-Vieyra, C. AU - Liang, G. AU - Jones, P. A. PY - 2012 DA - 2012// TI - Gene reactivation by 5-aza-2’-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions JO - PLoS Genet. VL - 8 UR - https://doi.org/10.1371/journal.pgen.1002604 DO - 10.1371/journal.pgen.1002604 ID - Yang2012 ER - TY - JOUR AU - Barzily-Rokni, M. AU - Friedman, N. AU - Ron-Bigger, S. AU - Isaac, S. AU - Michlin, D. AU - Eden, A. PY - 2011 DA - 2011// TI - Synergism between DNA methylation and macroH2A1 occupancy in epigenetic silencing of the tumor suppressor gene p16(CDKN2A) JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq994 DO - 10.1093/nar/gkq994 ID - Barzily-Rokni2011 ER - TY - JOUR AU - Hua, S. AU - Kallen, C. B. AU - Dhar, R. AU - Baquero, M. T. AU - Mason, C. E. AU - Russell, B. A. PY - 2008 DA - 2008// TI - Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression JO - Mol Syst Biol. VL - 4 UR - https://doi.org/10.1038/msb.2008.25 DO - 10.1038/msb.2008.25 ID - Hua2008 ER - TY - JOUR AU - Svotelis, A. AU - Gevry, N. AU - Grondin, G. AU - Gaudreau, L. PY - 2010 DA - 2010// TI - H2A.Z overexpression promotes cellular proliferation of breast cancer cells JO - Cell Cycle. VL - 9 UR - https://doi.org/10.4161/cc.9.2.10465 DO - 10.4161/cc.9.2.10465 ID - Svotelis2010 ER - TY - JOUR AU - Baptista, T. AU - Graca, I. AU - Sousa, E. J. AU - Oliveira, A. I. AU - Costa, N. R. AU - Costa-Pinheiro, P. PY - 2013 DA - 2013// TI - Regulation of histone H2A.Z expression is mediated by sirtuin 1 in prostate cancer JO - Oncotarget VL - 4 UR - https://doi.org/10.18632/oncotarget.1237 DO - 10.18632/oncotarget.1237 ID - Baptista2013 ER - TY - JOUR AU - Dunican, D. S. AU - McWilliam, P. AU - Tighe, O. AU - Parle-McDermott, A. AU - Croke, D. T. PY - 2002 DA - 2002// TI - Gene expression differences between the microsatellite instability (MIN) and chromosomal instability (CIN) phenotypes in colorectal cancer revealed by high-density cDNA array hybridization JO - Oncogene VL - 21 UR - https://doi.org/10.1038/sj.onc.1205431 DO - 10.1038/sj.onc.1205431 ID - Dunican2002 ER - TY - JOUR AU - Yang, B. AU - Tong, R. AU - Liu, H. AU - Wu, J. AU - Chen, D. AU - Xue, Z. PY - 2018 DA - 2018// TI - H2A.Z regulates tumorigenesis, metastasis and sensitivity to cisplatin in intrahepatic cholangiocarcinoma JO - Int J Oncol. VL - 52 UR - https://doi.org/10.3892/ijo.2018.4292 DO - 10.3892/ijo.2018.4292 ID - Yang2018 ER - TY - JOUR AU - Yang, H. D. AU - Kim, P. J. AU - Eun, J. W. AU - Shen, Q. AU - Kim, H. S. AU - Shin, W. C. PY - 2016 DA - 2016// TI - Oncogenic potential of histone-variant H2A.Z.1 and its regulatory role in cell cycle and epithelial-mesenchymal transition in liver cancer JO - Oncotarget. VL - 7 UR - https://doi.org/10.18632/oncotarget.7194 DO - 10.18632/oncotarget.7194 ID - Yang2016 ER - TY - JOUR AU - Chen, I. Y. AU - Lypowy, J. AU - Pain, J. AU - Sayed, D. AU - Grinberg, S. AU - Alcendor, R. R. PY - 2006 DA - 2006// TI - Histone H2A.z is essential for cardiac myocyte hypertrophy but opposed by silent information regulator 2alpha JO - J Biol Chem. VL - 281 UR - https://doi.org/10.1074/jbc.m601443200 DO - 10.1074/jbc.m601443200 ID - Chen2006 ER - TY - JOUR AU - Zhao, H. AU - Jin, S. AU - Gewirtz, A. M. PY - 2012 DA - 2012// TI - The histone acetyltransferase TIP60 interacts with c-Myb and inactivates its transcriptional activity in human leukemia JO - J Biol Chem VL - 287 UR - https://doi.org/10.1074/jbc.M111.279950 DO - 10.1074/jbc.M111.279950 ID - Zhao2012 ER - TY - JOUR AU - Gorrini, C. AU - Squatrito, M. AU - Luise, C. AU - Syed, N. AU - Perna, D. AU - Wark, L. PY - 2007 DA - 2007// TI - Tip60 is a haplo-insufficient tumour suppressor required for an oncogene-induced DNA damage response JO - Nature VL - 448 UR - https://doi.org/10.1038/nature06055 DO - 10.1038/nature06055 ID - Gorrini2007 ER - TY - JOUR AU - Chevillard-Briet, M. AU - Quaranta, M. AU - Grezy, A. AU - Mattera, L. AU - Courilleau, C. AU - Philippe, M. PY - 2014 DA - 2014// TI - Interplay between chromatin-modifying enzymes controls colon cancer progression through Wnt signaling JO - Hum Mol Genet VL - 23 UR - https://doi.org/10.1093/hmg/ddt604 DO - 10.1093/hmg/ddt604 ID - Chevillard-Briet2014 ER - TY - JOUR AU - Ran, F. A. AU - Hsu, P. D. AU - Wright, J. AU - Agarwala, V. AU - Scott, D. A. AU - Zhang, F. PY - 2013 DA - 2013// TI - Genome engineering using the CRISPR-Cas9 system JO - Nat Protoc VL - 8 UR - https://doi.org/10.1038/nprot.2013.143 DO - 10.1038/nprot.2013.143 ID - Ran2013 ER - TY - JOUR AU - Serikawa, T. AU - Eberle, J. AU - Kurreck, J. PY - 2017 DA - 2017// TI - Effects of genomic disruption of a guanine quadruplex in the 5′ UTR of the Bcl-2 mRNA in melanoma cells JO - FEBS Lett VL - 591 UR - https://doi.org/10.1002/1873-3468.12855 DO - 10.1002/1873-3468.12855 ID - Serikawa2017 ER - TY - JOUR AU - Song, Y. AU - Xu, Y. AU - Deng, J. AU - Chen, M. AU - Lu, Y. AU - Wang, Y. PY - 2017 DA - 2017// TI - CRISPR/Cas9-mediated mutation of tyrosinase (Tyr) 3′ UTR induce graying in rabbit JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/s41598-017-01727-y DO - 10.1038/s41598-017-01727-y ID - Song2017 ER - TY - JOUR AU - Zhao, W. AU - Siegel, D. AU - Biton, A. AU - Tonqueze, O. L. AU - Zaitlen, N. AU - Ahituv, N. PY - 2017 DA - 2017// TI - CRISPR-Cas9-mediated functional dissection of 3′-UTRs JO - Nucleic Acids Res VL - 45 UR - https://doi.org/10.1093/nar/gkx675 DO - 10.1093/nar/gkx675 ID - Zhao2017 ER - TY - JOUR AU - Kataoka, K. AU - Shiraishi, Y. AU - Takeda, Y. AU - Sakata, S. AU - Matsumoto, M. AU - Nagano, S. PY - 2016 DA - 2016// TI - Aberrant PD-L1 expression through 3′-UTR disruption in multiple cancers JO - Nature VL - 534 UR - https://doi.org/10.1038/nature18294 DO - 10.1038/nature18294 ID - Kataoka2016 ER - TY - JOUR AU - Chang, J. W. AU - Zhang, W. AU - Yeh, H. S. AU - Park, M. AU - Yao, C. AU - Shi, Y. PY - 2018 DA - 2018// TI - An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gky340 DO - 10.1093/nar/gky340 ID - Chang2018 ER - TY - JOUR AU - Miller, J. C. AU - Holmes, M. C. AU - Wang, J. AU - Guschin, D. Y. AU - Lee, Y. L. AU - Rupniewski, I. PY - 2007 DA - 2007// TI - An improved zinc-finger nuclease architecture for highly specific genome editing JO - Nat Biotechnol VL - 25 UR - https://doi.org/10.1038/nbt1319 DO - 10.1038/nbt1319 ID - Miller2007 ER - TY - JOUR AU - Collin, J. AU - Mellough, C. B. AU - Dorgau, B. AU - Przyborski, S. AU - Moreno-Gimeno, I. AU - Lako, M. PY - 2016 DA - 2016// TI - Using zinc finger nuclease technology to generate CRX-reporter human embryonic stem cells as a tool to identify and study the emergence of photoreceptors precursors during pluripotent stem cell differentiation JO - Stem Cells VL - 34 UR - https://doi.org/10.1002/stem.2240 DO - 10.1002/stem.2240 ID - Collin2016 ER - TY - JOUR AU - Wang, Y. AU - Long, H. AU - Yu, J. AU - Dong, L. AU - Wassef, M. AU - Zhuo, B. PY - 2018 DA - 2018// TI - Histone variants H2A.Z and H3.3 coordinately regulate PRC2-dependent H3K27me3 deposition and gene expression regulation in mES cells JO - BMC Biol. VL - 16 UR - https://doi.org/10.1186/s12915-018-0568-6 DO - 10.1186/s12915-018-0568-6 ID - Wang2018 ER - TY - JOUR AU - Wu, W. H. AU - Wu, C. H. AU - Ladurner, A. AU - Mizuguchi, G. AU - Wei, D. AU - Xiao, H. PY - 2009 DA - 2009// TI - N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex JO - J Biol Chem VL - 284 UR - https://doi.org/10.1074/jbc.M808830200 DO - 10.1074/jbc.M808830200 ID - Wu2009 ER - TY - JOUR AU - Beck, H. C. AU - Nielsen, E. C. AU - Matthiesen, R. AU - Jensen, L. H. AU - Sehested, M. AU - Finn, P. PY - 2006 DA - 2006// TI - Quantitative proteomic analysis of post-translational modifications of human histones JO - Mol Cell Proteomics VL - 5 UR - https://doi.org/10.1074/mcp.M600007-MCP200 DO - 10.1074/mcp.M600007-MCP200 ID - Beck2006 ER - TY - JOUR AU - Bonenfant, D. AU - Coulot, M. AU - Towbin, H. AU - Schindler, P. AU - Oostrum, J. PY - 2006 DA - 2006// TI - Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry JO - Mol Cell Proteomics VL - 5 UR - https://doi.org/10.1074/mcp.M500288-MCP200 DO - 10.1074/mcp.M500288-MCP200 ID - Bonenfant2006 ER - TY - JOUR AU - Kim, S. C. AU - Sprung, R. AU - Chen, Y. AU - Xu, Y. AU - Ball, H. AU - Pei, J. PY - 2006 DA - 2006// TI - Substrate and functional diversity of lysine acetylation revealed by a proteomics survey JO - Mol Cell VL - 23 UR - https://doi.org/10.1016/j.molcel.2006.06.026 DO - 10.1016/j.molcel.2006.06.026 ID - Kim2006 ER - TY - JOUR AU - Choudhary, C. AU - Kumar, C. AU - Gnad, F. AU - Nielsen, M. L. AU - Rehman, M. AU - Walther, T. C. PY - 2009 DA - 2009// TI - Lysine acetylation targets protein complexes and co-regulates major cellular functions JO - Science VL - 325 UR - https://doi.org/10.1126/science.1175371 DO - 10.1126/science.1175371 ID - Choudhary2009 ER - TY - JOUR AU - Beli, P. AU - Lukashchuk, N. AU - Wagner, S. A. AU - Weinert, B. T. AU - Olsen, J. V. AU - Baskcomb, L. PY - 2012 DA - 2012// TI - Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response JO - Mol Cell VL - 46 UR - https://doi.org/10.1016/j.molcel.2012.01.026 DO - 10.1016/j.molcel.2012.01.026 ID - Beli2012 ER - TY - JOUR AU - Boskovic, A. AU - Bender, A. AU - Gall, L. AU - Ziegler-Birling, C. AU - Beaujean, N. AU - Torres-Padilla, M. E. PY - 2012 DA - 2012// TI - Analysis of active chromatin modifications in early mammalian embryos reveals uncoupling of H2A.Z acetylation and H3K36 trimethylation from embryonic genome activation JO - Epigenetics. VL - 7 UR - https://doi.org/10.4161/epi.20584 DO - 10.4161/epi.20584 ID - Boskovic2012 ER - TY - JOUR AU - Gallant-Behm, C. L. AU - Espinosa, J. M. PY - 2013 DA - 2013// TI - DeltaNp63alpha utilizes multiple mechanisms to repress transcription in squamous cell carcinoma cells JO - Cell Cycle VL - 12 UR - https://doi.org/10.4161/cc.23593 DO - 10.4161/cc.23593 ID - Gallant-Behm2013 ER - TY - JOUR AU - Mertins, P. AU - Qiao, J. W. AU - Patel, J. AU - Udeshi, N. D. AU - Clauser, K. R. AU - Mani, D. R. PY - 2013 DA - 2013// TI - Integrated proteomic analysis of post-translational modifications by serial enrichment JO - Nat Methods VL - 10 UR - https://doi.org/10.1038/nmeth.2518 DO - 10.1038/nmeth.2518 ID - Mertins2013 ER - TY - JOUR AU - Weinert, B. T. AU - Scholz, C. AU - Wagner, S. A. AU - Iesmantavicius, V. AU - Su, D. AU - Daniel, J. A. PY - 2013 DA - 2013// TI - Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation JO - Cell Rep VL - 4 UR - https://doi.org/10.1016/j.celrep.2013.07.024 DO - 10.1016/j.celrep.2013.07.024 ID - Weinert2013 ER - TY - JOUR AU - Wu, Q. AU - Cheng, Z. AU - Zhu, J. AU - Xu, W. AU - Peng, X. AU - Chen, C. PY - 2015 DA - 2015// TI - Suberoylanilide hydroxamic acid treatment reveals crosstalks among proteome, ubiquitylome and acetylome in non-small cell lung cancer A549 cell line JO - Sci Rep VL - 5 UR - https://doi.org/10.1038/srep09520 DO - 10.1038/srep09520 ID - Wu2015 ER - TY - JOUR AU - Weinert, B. T. AU - Narita, T. AU - Satpathy, S. AU - Srinivasan, B. AU - Hansen, B. K. AU - Scholz, C. PY - 2018 DA - 2018// TI - Time-resolved analysis reveals rapid dynamics and broad scope of the CBP/p300 acetylome JO - Cell VL - 174 UR - https://doi.org/10.1016/j.cell.2018.04.033 DO - 10.1016/j.cell.2018.04.033 ID - Weinert2018 ER - TY - JOUR AU - Danielsen, J. M. AU - Sylvestersen, K. B. AU - Bekker-Jensen, S. AU - Szklarczyk, D. AU - Poulsen, J. W. AU - Horn, H. PY - 2011 DA - 2011// TI - Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level JO - Mol Cell Proteomics. VL - 10 UR - https://doi.org/10.1074/mcp.m110.003590 DO - 10.1074/mcp.m110.003590 ID - Danielsen2011 ER - TY - JOUR AU - Hornbeck, P. V. AU - Zhang, B. AU - Murray, B. AU - Kornhauser, J. M. AU - Latham, V. AU - Skrzypek, E. PY - 2015 DA - 2015// TI - PhosphoSitePlus, 2014: mutations, PTMs and recalibrations JO - Nucleic Acids Res. VL - 43 UR - https://doi.org/10.1093/nar/gku1267 DO - 10.1093/nar/gku1267 ID - Hornbeck2015 ER - TY - JOUR AU - Guo, A. AU - Villen, J. AU - Kornhauser, J. AU - Lee, K. A. AU - Stokes, M. P. AU - Rikova, K. PY - 2008 DA - 2008// TI - Signaling networks assembled by oncogenic EGFR and c-Met JO - Proc Natl Acad Sci USA. VL - 105 UR - https://doi.org/10.1073/pnas.0707270105 DO - 10.1073/pnas.0707270105 ID - Guo2008 ER - TY - JOUR AU - Kettenbach, A. N. AU - Schweppe, D. K. AU - Faherty, B. K. AU - Pechenick, D. AU - Pletnev, A. A. AU - Gerber, S. A. PY - 2011 DA - 2011// TI - Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells JO - Sci Signal. VL - 4 UR - https://doi.org/10.1126/scisignal.2001497 DO - 10.1126/scisignal.2001497 ID - Kettenbach2011 ER - TY - JOUR AU - Schweppe, D. K. AU - Rigas, J. R. AU - Gerber, S. A. PY - 2013 DA - 2013// TI - Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors JO - J Proteomics VL - 91 UR - https://doi.org/10.1016/j.jprot.2013.07.023 DO - 10.1016/j.jprot.2013.07.023 ID - Schweppe2013 ER - TY - JOUR AU - Tsai, C. F. AU - Wang, Y. T. AU - Yen, H. Y. AU - Tsou, C. C. AU - Ku, W. C. AU - Lin, P. Y. PY - 2015 DA - 2015// TI - Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics JO - Nat Commun VL - 6 UR - https://doi.org/10.1038/ncomms7622 DO - 10.1038/ncomms7622 ID - Tsai2015 ER - TY - JOUR AU - Mertins, P. AU - Yang, F. AU - Liu, T. AU - Mani, D. R. AU - Petyuk, V. A. AU - Gillette, M. A. PY - 2014 DA - 2014// TI - Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels JO - Mol Cell Proteomics VL - 13 UR - https://doi.org/10.1074/mcp.M113.036392 DO - 10.1074/mcp.M113.036392 ID - Mertins2014 ER - TY - JOUR AU - Lumpkin, R. J. AU - Gu, H. AU - Zhu, Y. AU - Leonard, M. AU - Ahmad, A. S. AU - Clauser, K. R. PY - 2017 DA - 2017// TI - Site-specific identification and quantitation of endogenous SUMO modifications under native conditions JO - Nat Commun VL - 8 UR - https://doi.org/10.1038/s41467-017-01271-3 DO - 10.1038/s41467-017-01271-3 ID - Lumpkin2017 ER - TY - JOUR AU - Kim, W. AU - Bennett, E. J. AU - Huttlin, E. L. AU - Guo, A. AU - Li, J. AU - Possemato, A. PY - 2011 DA - 2011// TI - Systematic and quantitative assessment of the ubiquitin-modified proteome JO - Mol Cell VL - 44 UR - https://doi.org/10.1016/j.molcel.2011.08.025 DO - 10.1016/j.molcel.2011.08.025 ID - Kim2011 ER - TY - JOUR AU - Wagner, S. A. AU - Beli, P. AU - Weinert, B. T. AU - Nielsen, M. L. AU - Cox, J. AU - Mann, M. PY - 2011 DA - 2011// TI - A proteome-wide quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles JO - Mol Cell Proteomics. VL - 10 UR - https://doi.org/10.1074/mcp.m111.013284 DO - 10.1074/mcp.m111.013284 ID - Wagner2011 ER - TY - JOUR AU - Povlsen, L. K. AU - Beli, P. AU - Wagner, S. A. AU - Poulsen, S. L. AU - Sylvestersen, K. B. AU - Poulsen, J. W. PY - 2012 DA - 2012// TI - Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass JO - Nat Cell Biol VL - 14 UR - https://doi.org/10.1038/ncb2579 DO - 10.1038/ncb2579 ID - Povlsen2012 ER - TY - JOUR AU - Wagner, S. A. AU - Beli, P. AU - Weinert, B. T. AU - Scholz, C. AU - Kelstrup, C. D. AU - Young, C. PY - 2012 DA - 2012// TI - Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues JO - Mol Cell Proteomics VL - 11 UR - https://doi.org/10.1074/mcp.M112.017905 DO - 10.1074/mcp.M112.017905 ID - Wagner2012 ER - TY - JOUR AU - Udeshi, N. D. AU - Svinkina, T. AU - Mertins, P. AU - Kuhn, E. AU - Mani, D. R. AU - Qiao, J. W. PY - 2013 DA - 2013// TI - Refined preparation and use of anti-diglycine remnant (K-epsilon-GG) antibody enables routine quantification of 10,000 s of ubiquitination sites in single proteomics experiments JO - Mol Cell Proteomics VL - 12 UR - https://doi.org/10.1074/mcp.O112.027094 DO - 10.1074/mcp.O112.027094 ID - Udeshi2013 ER - TY - JOUR AU - Boeing, S. AU - Williamson, L. AU - Encheva, V. AU - Gori, I. AU - Saunders, R. E. AU - Instrell, R. PY - 2016 DA - 2016// TI - Multiomic analysis of the UV-induced DNA damage response JO - Cell Rep. VL - 15 UR - https://doi.org/10.1016/j.celrep.2016.04.047 DO - 10.1016/j.celrep.2016.04.047 ID - Boeing2016 ER - TY - JOUR AU - Surface, L. E. AU - Fields, P. A. AU - Subramanian, V. AU - Behmer, R. AU - Udeshi, N. AU - Peach, S. E. PY - 2016 DA - 2016// TI - H2A.Z.1 monoubiquitylation antagonizes BRD2 to maintain poised chromatin in ESCs JO - Cell Rep. VL - 14 UR - https://doi.org/10.1016/j.celrep.2015.12.100 DO - 10.1016/j.celrep.2015.12.100 ID - Surface2016 ER - TY - JOUR AU - Li, Z. AU - Gadue, P. AU - Chen, K. AU - Jiao, Y. AU - Tuteja, G. AU - Schug, J. PY - 2012 DA - 2012// TI - Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation JO - Cell VL - 151 UR - https://doi.org/10.1016/j.cell.2012.11.018 DO - 10.1016/j.cell.2012.11.018 ID - Li2012 ER -