Table 1 Location of and primers for sites that are positive or negative (yet still in open chromatin) for Tcf7l2 binding
Chr | Start | End | Forward primer | Reverse primer |
|---|---|---|---|---|
Positive controls | ||||
14 | 49155664 | 49155815 | AAACCACTCTCCCCCAAAGC | TTTGAAGTTCCGGAGCGGTT |
15 | 30383190 | 30383333 | CTTAAAAGCAGGCTCCCTCGC | TCCACACTTCAAAAGGAGAGAAAG |
4 | 129251719 | 129251895 | ATTTCAAACAAACTCCCCGCTG | TGGAATTAGTTTGGGGCTCTGAT |
5 | 74953049 | 74953184 | AAGTGACCCTTTGTTCTCTGTC | CAAAGAATGGGCCGGGATG |
Negative controls | ||||
14 | 111679747 | 111681304 | ACAGCTTCACTTCCTTGCCA | TTTGAATGAGGGAAGTCAGCT |
7 | 10494816 | 10495738 | GCCCTTAGAACCGCTCCTTT | TCCAGATCGTGTGCAAGACC |
1 | 99772205 | 99772613 | ACTATTGGTGGAGCTGTGCG | TGCTTGCCTTTCTTGCTTGC |
3 | 111370868 | 111371261 | AAGCAGCAAGAGGGAACACT | TGCATGCCACAGAATACTTTTAA |