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Table 4 Cell-type-specific treatment-induced genes show preference to cell-type-specific basal A compartment

From: Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions

HMEC–MCF7 AA AB BA BB Total R Enrichment p value
Induced only in HMEC 29 20 6 9 64 3.44 2.0 0.00095
Induced only in MCF7 267 22 36 33 358 1.67   
Induced in both 34 4 1 4 43    
  1. Preference to cell-type specific A/B compartment is emphasized in italics