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Table 4 Cell-type-specific treatment-induced genes show preference to cell-type-specific basal A compartment

From: Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions

HMEC–MCF7

AA

AB

BA

BB

Total

R

Enrichment

p value

Induced only in HMEC

29

20

6

9

64

3.44

2.0

0.00095

Induced only in MCF7

267

22

36

33

358

1.67

  

Induced in both

34

4

1

4

43

   
  1. Preference to cell-type specific A/B compartment is emphasized in italics