Skip to main content

Table 1 Genomic size and number of genes assigned to A/B compartments

From: Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions

Cell line

A total size (Mbp)

# Genes in A

B total size (Mbp)

# Genes in B

GM12878

1322

15,184

1410

3958

K562

1376

15,401

1356

3741

HUVEC

1382

15,116

1350

4022

HMEC

1317

14,593

1415

4543

NHEK

1433

14,864

1300

4276

IMR90

1310

13,569

1423

5577

T47D

1372

14,114

1350

4979

MCF7

1384

15,056

1450

4758

MCF10

1386

15,090

1451

4772

LNCAP

1433

14,112

1299

5021

PC3

1395

13,341

1313

5692

KBM7

1301

14,506

1431

4631

PrEC

1327

13,994

1387

5041