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Table 3 AP–MS data for Ibd1-FZZ, Ada2-FZZ and Swc4-FZZ purified from vegetative cells

From: The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila

TTHERM

Gene name

Spectral count sum Ibd1 (BAIT)

Spectral count sum Swc4 (BAIT)

Spectral count sum Ada2 (BAIT)

Possible complex

Notes

TTHERM_00729230

IBD1

827

99

58

All listed below

Bromodomain-containing protein

TTHERM_00486440

Atxr3/SET1-like

125

–

–

COMPASS

–

TTHERM_00584840

SWI3

411

–

–

SWI/SNF

–

TTHERM_01245640

BRG1

202

–

–

SWI/SNF

SNF2 catalytic subunit

TTHERM_00925560

SNF12

81

–

–

SWI/SNF

–

TTHERM_00243900

SWI1

92

–

–

SWI/SNF

–

TTHERM_00304150

SNF5

64

–

–

SWI/SNF

–

TTHERM_00092790

SAF1

47

–

–

SWI/SNF

Transmembrane protein, putative

TTHERM_00346460

SAF2

39

–

–

SWI/SNF

Hypothetical protein—13% glutamine

TTHERM_00637690

SAF4

36

–

–

SWI/SNF

Hypothetical protein—31% glutamine

TTHERM_00129650

SAF3

24

–

–

SWI/SNF

Hypothetical protein—26% glutamine

TTHERM_00241840

SAF5

29

–

–

SWI/SNF

PHD finger-containing protein

TTHERM_00317000

Actin-like

63

–

–

Undefined

–

TTHERM_00046920

RVB2

174

893

–

SWR

–

TTHERM_00476820

RVB1

121

333

–

SWR

–

TTHERM_01546860

SWR1

113

561

–

SWR

–

TTHERM_00975380

Actin-like

101

542

–

SWR

–

TTHERM_01005190

ARP6

18

82

–

SWR

–

TTHERM_00170260

Sap3

23

144

–

SWR

Hypothetical protein

TTHERM_00357110

SWC4

33

419

–

SWR

–

TTHERM_00136450

SWC5/AOR1

32

121

–

SWR

Bucentaur or craniofacial development-containing protein

TTHERM_00355040

Sap1

20

78

–

SWR

AT-hook-containing protein

TTHERM_00388500

SWC2-like

19

75

–

SWR

–

TTHERM_00561450

YAF9

15

200

–

SWR

–

TTHERM_00046150

Sap2

9

32

–

SWR

Hypothetical protein

TTHERM_00978770

TRA1

–

767

–

Undefined

–

TTHERM_00979770

TRA2

–

179

–

Undefined

–

TTHERM_00444700

Aap1

51

–

356

SAGA

PHD finger-containing protein

TTHERM_00248390

GCN5

32

–

605

SAGA

–

TTHERM_00790730

ADA2

28

–

429

SAGA

–

TTHERM_00145290

Aap6

–

–

152

SAGA

–

TTHERM_00313140

Aap2

–

–

69

SAGA

PHD finger-containing protein

TTHERM_00670640

Aap4

–

–

314

SAGA

PHD finger-containing protein

TTHERM_00502120

Aap3

–

–

184

SAGA

PHD finger-containing protein

TTHERM_00420400

Aap8

–

–

194

SAGA

–

TTHERM_00046390

Aap7

–

–

93

SAGA

–

TTHERM_00464970

Aap5

–

–

247

SAGA

–

  1. Curated SAINTexpress data from 2 biological replicates of Ibd1-FZZ, Ada2-FZZ and Swc4-FZZ AP–MS samples