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Table 3 AP–MS data for Ibd1-FZZ, Ada2-FZZ and Swc4-FZZ purified from vegetative cells

From: The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila

TTHERM

Gene name

Spectral count sum Ibd1 (BAIT)

Spectral count sum Swc4 (BAIT)

Spectral count sum Ada2 (BAIT)

Possible complex

Notes

TTHERM_00729230

IBD1

827

99

58

All listed below

Bromodomain-containing protein

TTHERM_00486440

Atxr3/SET1-like

125

COMPASS

TTHERM_00584840

SWI3

411

SWI/SNF

TTHERM_01245640

BRG1

202

SWI/SNF

SNF2 catalytic subunit

TTHERM_00925560

SNF12

81

SWI/SNF

TTHERM_00243900

SWI1

92

SWI/SNF

TTHERM_00304150

SNF5

64

SWI/SNF

TTHERM_00092790

SAF1

47

SWI/SNF

Transmembrane protein, putative

TTHERM_00346460

SAF2

39

SWI/SNF

Hypothetical protein—13% glutamine

TTHERM_00637690

SAF4

36

SWI/SNF

Hypothetical protein—31% glutamine

TTHERM_00129650

SAF3

24

SWI/SNF

Hypothetical protein—26% glutamine

TTHERM_00241840

SAF5

29

SWI/SNF

PHD finger-containing protein

TTHERM_00317000

Actin-like

63

Undefined

TTHERM_00046920

RVB2

174

893

SWR

TTHERM_00476820

RVB1

121

333

SWR

TTHERM_01546860

SWR1

113

561

SWR

TTHERM_00975380

Actin-like

101

542

SWR

TTHERM_01005190

ARP6

18

82

SWR

TTHERM_00170260

Sap3

23

144

SWR

Hypothetical protein

TTHERM_00357110

SWC4

33

419

SWR

TTHERM_00136450

SWC5/AOR1

32

121

SWR

Bucentaur or craniofacial development-containing protein

TTHERM_00355040

Sap1

20

78

SWR

AT-hook-containing protein

TTHERM_00388500

SWC2-like

19

75

SWR

TTHERM_00561450

YAF9

15

200

SWR

TTHERM_00046150

Sap2

9

32

SWR

Hypothetical protein

TTHERM_00978770

TRA1

767

Undefined

TTHERM_00979770

TRA2

179

Undefined

TTHERM_00444700

Aap1

51

356

SAGA

PHD finger-containing protein

TTHERM_00248390

GCN5

32

605

SAGA

TTHERM_00790730

ADA2

28

429

SAGA

TTHERM_00145290

Aap6

152

SAGA

TTHERM_00313140

Aap2

69

SAGA

PHD finger-containing protein

TTHERM_00670640

Aap4

314

SAGA

PHD finger-containing protein

TTHERM_00502120

Aap3

184

SAGA

PHD finger-containing protein

TTHERM_00420400

Aap8

194

SAGA

TTHERM_00046390

Aap7

93

SAGA

TTHERM_00464970

Aap5

247

SAGA

  1. Curated SAINTexpress data from 2 biological replicates of Ibd1-FZZ, Ada2-FZZ and Swc4-FZZ AP–MS samples