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Table 3 AP–MS data for Ibd1-FZZ, Ada2-FZZ and Swc4-FZZ purified from vegetative cells

From: The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila

TTHERM Gene name Spectral count sum Ibd1 (BAIT) Spectral count sum Swc4 (BAIT) Spectral count sum Ada2 (BAIT) Possible complex Notes
TTHERM_00729230 IBD1 827 99 58 All listed below Bromodomain-containing protein
TTHERM_00486440 Atxr3/SET1-like 125 COMPASS
TTHERM_00584840 SWI3 411 SWI/SNF
TTHERM_01245640 BRG1 202 SWI/SNF SNF2 catalytic subunit
TTHERM_00925560 SNF12 81 SWI/SNF
TTHERM_00243900 SWI1 92 SWI/SNF
TTHERM_00304150 SNF5 64 SWI/SNF
TTHERM_00092790 SAF1 47 SWI/SNF Transmembrane protein, putative
TTHERM_00346460 SAF2 39 SWI/SNF Hypothetical protein—13% glutamine
TTHERM_00637690 SAF4 36 SWI/SNF Hypothetical protein—31% glutamine
TTHERM_00129650 SAF3 24 SWI/SNF Hypothetical protein—26% glutamine
TTHERM_00241840 SAF5 29 SWI/SNF PHD finger-containing protein
TTHERM_00317000 Actin-like 63 Undefined
TTHERM_00046920 RVB2 174 893 SWR
TTHERM_00476820 RVB1 121 333 SWR
TTHERM_01546860 SWR1 113 561 SWR
TTHERM_00975380 Actin-like 101 542 SWR
TTHERM_01005190 ARP6 18 82 SWR
TTHERM_00170260 Sap3 23 144 SWR Hypothetical protein
TTHERM_00357110 SWC4 33 419 SWR
TTHERM_00136450 SWC5/AOR1 32 121 SWR Bucentaur or craniofacial development-containing protein
TTHERM_00355040 Sap1 20 78 SWR AT-hook-containing protein
TTHERM_00388500 SWC2-like 19 75 SWR
TTHERM_00561450 YAF9 15 200 SWR
TTHERM_00046150 Sap2 9 32 SWR Hypothetical protein
TTHERM_00978770 TRA1 767 Undefined
TTHERM_00979770 TRA2 179 Undefined
TTHERM_00444700 Aap1 51 356 SAGA PHD finger-containing protein
TTHERM_00248390 GCN5 32 605 SAGA
TTHERM_00790730 ADA2 28 429 SAGA
TTHERM_00145290 Aap6 152 SAGA
TTHERM_00313140 Aap2 69 SAGA PHD finger-containing protein
TTHERM_00670640 Aap4 314 SAGA PHD finger-containing protein
TTHERM_00502120 Aap3 184 SAGA PHD finger-containing protein
TTHERM_00420400 Aap8 194 SAGA
TTHERM_00046390 Aap7 93 SAGA
TTHERM_00464970 Aap5 247 SAGA
  1. Curated SAINTexpress data from 2 biological replicates of Ibd1-FZZ, Ada2-FZZ and Swc4-FZZ AP–MS samples