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Table 1 List of UCHL1 binding sites containing CCCTAA (TTAGGG) repeats within and 5-kb up or downstream genes in DU 145 cells

From: Ubiquitin C-terminal hydrolase isozyme L1 is associated with shelterin complex at interstitial telomeric sites

Chr

Peak location

Expression levelb

 

Start

End

Gene name

chr1

10,102

10,425

Intergenic, upstream of DDX11L1a

–

chr1

18,580,820

18,580,945

Intron (IGSF21, intron 2 of 9)

–

chr2

75,299,579

75,299,730

Intron (TACR1, intron 2 of 4)

–

chr2

114,360,577

114,360,716

Intron (DDX11L2, intron 1 of 2)a

–

chr2

182,140,505

182,140,611

Intron (LOC101927156, intron 3 of 4)

NA

chr2

241,553,483

241,553,609

Intron (GPR35, intron 2 of 5)a

–

chr3

9,736,179

9,736,298

Intron (MTMR14, intron 17 of 17)

++

chr3

159,411,986

159,412,107

Intron (SCHIP1, intron 1 of 6)

++/−

chr3

197,900,087

197,900,374

Intron (FAM157A, intron 6 of 6)a

–

chr3

197,901,288

197,901,414

Intron (FAM157A, intron 6 of 6)a

–

chr4

698,901

699,003

Promoter–TSS (PCGF3)

++

chr5

82,811,907

82,812,020

Intron (VCAN, intron 6 of 12)a

–

chr6

147,601

147,760

Intron (LINC00266-3, intron 1 of 2

NA

chr6

38,912,686

38,912,816

Intron (DNAH8, intron 79 of 92)

–

chr6

161,866,788

161,866,892

Intron (PARK2, intron 8 of 10)

–

chr9

10,007

10,127

Intergenic, upstream of DDX11L5a

NA

chr9

10,153

10,269

Intergenic, upstream of DDX11L5a

NA

chr9

10,288

10,403

Intergenic, upstream of DDX11L5a

NA

chr9

2,824,012

2,824,113

Intron (KIAA0020, intron 11 of 17)

++

chr9

141,054,226

141,054,361

Intron (TUBBP5, intron 1 of 4)a

+

chr10

4,111,307

4,111,412

Intron (LOC101927964, intron 1 of 3)

NA

chr12

22,393,946

22,394,047

Intron (ST8SIA1, intron 3 of 3)

–

chr15

42,243,142

42,243,265

Intron (EHD4, intron 2 of 5)

+++

chr16

59,970

60,077

Intergenic, upstream of DDX11L10

–

chr16

25,771,380

25,771,526

Intron (HS3ST4, intron 1 of 1)a

–

chr16

75,368,040

75,368,166

Intron (CFDP1, intron 5 of 6)

++

chr16

88,946,595

88,946,716

Intron (CBFA2T3, intron 9 of 10)

–

chr18

10,273

10,379

Intergenic, upstream of LOC102723376a

NA

chr20

10,172,151

10,172,266

Intron (SNAP25-AS1, intron 2 of 4)a

NA

chr20

62,918,067

62,918,182

Intergenic, upstream of LINC00266-1a

–

chr20

62,918,353

62,918,469

Intergenic, upstream of LINC00266-1a

–

chr20

62,918,583

62,918,739

Intergenic, upstream of LINC00266-1a

–

chr21

36,085,122

36,085,247

Intron (CLIC6, intron 5 of 5)

–

chr21

45,851,799

45,851,900

Intron (TRPM2, intron 27 of 31)

+

chr22

45,022,364

45,022,483

Intergenic, upstream of LINC00229a

–

  1. aIdentifies binding sites also detected in HEK293T cells
  2. bExpression levels in DU 145 cells were extracted from NCBI GEO GSE71756 and GSE71208