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Table 1 List of UCHL1 binding sites containing CCCTAA (TTAGGG) repeats within and 5-kb up or downstream genes in DU 145 cells

From: Ubiquitin C-terminal hydrolase isozyme L1 is associated with shelterin complex at interstitial telomeric sites

Chr Peak location Expression levelb
  Start End Gene name
chr1 10,102 10,425 Intergenic, upstream of DDX11L1a
chr1 18,580,820 18,580,945 Intron (IGSF21, intron 2 of 9)
chr2 75,299,579 75,299,730 Intron (TACR1, intron 2 of 4)
chr2 114,360,577 114,360,716 Intron (DDX11L2, intron 1 of 2)a
chr2 182,140,505 182,140,611 Intron (LOC101927156, intron 3 of 4) NA
chr2 241,553,483 241,553,609 Intron (GPR35, intron 2 of 5)a
chr3 9,736,179 9,736,298 Intron (MTMR14, intron 17 of 17) ++
chr3 159,411,986 159,412,107 Intron (SCHIP1, intron 1 of 6) ++/−
chr3 197,900,087 197,900,374 Intron (FAM157A, intron 6 of 6)a
chr3 197,901,288 197,901,414 Intron (FAM157A, intron 6 of 6)a
chr4 698,901 699,003 Promoter–TSS (PCGF3) ++
chr5 82,811,907 82,812,020 Intron (VCAN, intron 6 of 12)a
chr6 147,601 147,760 Intron (LINC00266-3, intron 1 of 2 NA
chr6 38,912,686 38,912,816 Intron (DNAH8, intron 79 of 92)
chr6 161,866,788 161,866,892 Intron (PARK2, intron 8 of 10)
chr9 10,007 10,127 Intergenic, upstream of DDX11L5a NA
chr9 10,153 10,269 Intergenic, upstream of DDX11L5a NA
chr9 10,288 10,403 Intergenic, upstream of DDX11L5a NA
chr9 2,824,012 2,824,113 Intron (KIAA0020, intron 11 of 17) ++
chr9 141,054,226 141,054,361 Intron (TUBBP5, intron 1 of 4)a +
chr10 4,111,307 4,111,412 Intron (LOC101927964, intron 1 of 3) NA
chr12 22,393,946 22,394,047 Intron (ST8SIA1, intron 3 of 3)
chr15 42,243,142 42,243,265 Intron (EHD4, intron 2 of 5) +++
chr16 59,970 60,077 Intergenic, upstream of DDX11L10
chr16 25,771,380 25,771,526 Intron (HS3ST4, intron 1 of 1)a
chr16 75,368,040 75,368,166 Intron (CFDP1, intron 5 of 6) ++
chr16 88,946,595 88,946,716 Intron (CBFA2T3, intron 9 of 10)
chr18 10,273 10,379 Intergenic, upstream of LOC102723376a NA
chr20 10,172,151 10,172,266 Intron (SNAP25-AS1, intron 2 of 4)a NA
chr20 62,918,067 62,918,182 Intergenic, upstream of LINC00266-1a
chr20 62,918,353 62,918,469 Intergenic, upstream of LINC00266-1a
chr20 62,918,583 62,918,739 Intergenic, upstream of LINC00266-1a
chr21 36,085,122 36,085,247 Intron (CLIC6, intron 5 of 5)
chr21 45,851,799 45,851,900 Intron (TRPM2, intron 27 of 31) +
chr22 45,022,364 45,022,483 Intergenic, upstream of LINC00229a
  1. aIdentifies binding sites also detected in HEK293T cells
  2. bExpression levels in DU 145 cells were extracted from NCBI GEO GSE71756 and GSE71208