Table 1 Mapping statistics
From: Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize
Tissue | Library type | Enzyme | Sequencing mode | Number of raw reads | Number of uniquely mapped reads | Mappability (%) | Genome coverage (%) | Bisulfite conversion rate (%) |
|---|---|---|---|---|---|---|---|---|
Shoot | RRBS | MseI | PE | 31,927,914 | 16,647,292 | 52.14 | 18.68 | 99.33 |
Tassel | RRBS | MseI | PE | 67,346,177 | 35,605,841 | 52.87 | 19.52 | 99.43 |
Shoot | RRBS | CviQI | PE | 61,099,496 | 34,007,664 | 55.66 | 16.95 | 99.57 |
Tassel | RRBS | CviQI | PE | 35,907,828 | 19,498,226 | 54.30 | 13.19 | 99.49 |
Shoot1 | WGBS | – | PE | 96,977,894 | 64,310,359 | 66.31 | 91.91 | – |
Shoot2 | WGBS | – | SE | 282,553,129 | 143,740,327 | 50.87 | 79.01 | – |