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Table 3 Average 5-hydroxymethylation levels at MspI sites located in the Dlk1-, IG- and Gtl2-DMRs

From: Asymmetric DNA methylation of CpG dyads is a feature of secondary DMRs associated with the Dlk1/Gtl2 imprinting cluster in mouse

 

Dlk1, site A

Dlk1, site B

IG-DMR

Gtl2, site A

Gtl2, site B

Gtl2, site C

9.5 d.p.c. embryo (n)

21.5% (4)

6.6% (3)

2.9% (3)

0% (4)

1.4% (4)

0.79% (1)

14.5 d.p.c. embryo (n)

39% (3)

10% (3)

3.1% (3)

0.8% (3)

1.6% (3)

1.2% (1)

5 d.p.p. liver (n)

10.2% (8)

6.5% (8)

3.7% (3)

2.5% (4)

0.9% (6)

1.4% (1)

Adult liver (n)

8.1% (3)

1.7% (3)

8.7% (3)

1.9% (3)

0.4% (3)

2.4% (1)

  1. n = number of biological replicates; each biological replicate was composed of three technical replicates; data for individual biological replicates are given in Additional file 5: Table S4