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Table 3 Characteristics of four biologically and statistically significant DNA methylation sites between Nicoyans and non-Nicoyans

From: Differential DNA methylation and lymphocyte proportions in a Costa Rican high longevity region

Probe ID

Pyrosequencing

450k array

Chr

Distance to closest TSS (bp)

Genomic region: gene

Gene ontology

Δβ

p value

Δβ

p value

q value

cg02853387

0.06

7.9E−05

0.07

1.3E−07

0.012

11

183072

Intragenic: intron 3 of DSCAML1

Protein homodimerization activity

cg02438481

0.08

1.9E−05

0.08

1.6E−07

0.012

6

−1861

Intergenic: C6orf123

–

cg13979274

0.06

9.1E−07

0.06

2.0E−07

0.012

19

4347

Intergenic: ~ 3 kb from 3′ end of OR10H1

G-protein coupled receptor/olfactory receptor activity

cg26107275

–

–

−0.07

2.2E−07

0.012

12

−407

Promoter: BC04264

–

  1. Δβ: (Delta beta; absolute mean difference of β values between groups (Nicoyans–non-Nicoyans)
  2. TSS Transcription start site, Chr chromosome