Skip to main content

Table 1 Summary of reader domain interactions identified via histone peptide microarrays

From: Histone peptide microarray screen of chromo and Tudor domains defines new histone lysine methylation interactions

Protein

Domain

Top array hits

Known interactions

References

HP1β/CBX1

Chromo

H3K9me1/2/3, H3K23me1/2/3

H3K9me1/2/3, H3K23me1/2/3

[21, 22, 46, 52]

HP1γ/CBX3

Chromo

H3K9me1/2/3, H3K23me3 a

H3K9me2/3

[21, 22, 52, 74]

HP1α/CBX5

Chromo

H3K9me1/2/3, H3K23me3 a

H3K9me1/2/3

[21, 48, 52]

CDYL1b

Chromo

H3K9me1/2/3, H3K27me2/3

H3K9me1/2/3, H3K27me1/2/3

[75]

CDYL2

Chromo

H3K9me2/3, H3K27me3

H3K9me1/2/3, H3K27me1/2/3

[76]

CHD1

Chromo (2)

H3K4me2/3

H3K4me3

[54, 55]

CHD7

Chromo (2)

H4me0

H3K4me1/2/3

[56]

CHD9

Chromo (2)

H4me0

  

MPP8

Chromo

H3K9me1/2/3, H3K23me2/3

H3K9me1/2/3, H3K23me1/2/3

[46, 77, 78]

53BP1

Tudor (2)

H3K4me2, H3K18me2a, H3K36me2a, H4K20me1/2

H3K4me2, H4K20me1/2

[42, 52]

JMJD2A

Tudor (2)

H3K4me2/3, H3K18me3a, H3K9me3, H4K20me2/3

H3K4me3, H4K20me2/3

[51, 52]

PHF20

Tudor (2)

H3K9me2/3, H4K8me1

H3K9me2, H3K27me2, H3K36me2

[35]

UHRF1

Tudor-like

H3K9me2/3

H3K9me2/3

[79, 80]

PHF1

Tudor

H3K36me3

H3K36me2/3

[81,82,83,84]

SGF29

Double Tudor

H3K4me3

H3K4me1/2/3

[85]

SPIN1

Triple Tudor

H3K4me2/3, H3K18me3, H4K20me3 a

H3K4me2/3

[40]

TDRD2

Tudor (extended)

H3K4me3

  

TDRD3

Tudor

H3R2me2a, H3R8me2a

pan-Rme2a

[53]

GLP

ANK

H3K9me1/2

H3K9me1/2

[86]

ING2

PHD

H3K4me2/3

H3K4me2/3

[87, 88]

TAF3

PHD

H3K4me2/3

H3K4me2/3

[89]

L3MBTL1

MBT (3)

H3K4me2, H3K9me2, H4K8me1

H3K4me1/2, H3K9me1/2, H3K27me1/2, H4K20me1/2

[90,91,92]

  1. Italics, validated by peptide pull-down assays
  2. aNovel interactions