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Fig. 3 | Epigenetics & Chromatin

Fig. 3

From: Genome-wide methylation data mirror ancestry information

Fig. 3

Capturing population structure in the CHAMACOS data. Presented are linear predictors of the first genotype-based PC using a the first two methylation PCs of the data, b the first two PCs calculated after applying a feature selection based on proximity of CpGs to nearby SNPs [21], c the first two PCs after adjusting the data for cell-type composition (adjusted methylation PCs), d the first two adjusted methylation PCs after excluding 167,738 probes containing SNPs from the data and e using the first two EPISTRUCTURE PCs

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