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Table 2 Oligonucleotides

From: High-throughput assessment of context-dependent effects of chromatin proteins

Name

Sequence (5′–3′)

GFP_f

AGGACAGCGTGATCTTCACC

GFP_r

CTTGAAGTGCATGTGGCTGT

upstream_f

CGTACTCCACCTCACCCATC

upstream_r

TTCATCGATACCGTCGACCT

TSR_f

CAAAGAAGCAAAAGCTGTTCCTTA

TSR_r

GCTGGAGTACAACATCTTCTTCTTGAC

160JvA

CTAAGGTAGCGAAGGCAATGCTACCAAATAC

161JvA

GACCGTTATAGTTATTTAAATTGTTTAACTTGG

AR152

ACACTCTTTCCCTACACGACGCTCTTCCGATCT

168_JvA

/5′phos/NNNNNNNNNNNNNNNNNNNNGATCATGCTAGTTGTGGTTTGTC

169_JvA

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCAGTGAAAAAAATGCTT

151AR

AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT

219AR

GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCTAAGGTGTATGTAAACTTCCGACTTCAACTG

iPCR indexing

CAAGCAGAAGACGGCATACGAGATNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC

Library indexing

CAAGCAGAAGACGGCATACGAGATNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGCACGCCTTCAAGACCCCCATCGCC

DamID adapter top

CTAATACGACTCACTATAGGGCAGCGTGGTCGCGGCCGAGGA

DamID adapter bottom

TCCTCGGCCGCG

Adr-PCR-Rand1

NNNNGTGGTCGCGGCCGAGGATC

Y-adaptor top

ACACTCTTTCCCTACACGACGCTCTTCCGATCT

Y-adaptor bottom

/5′phos/GATCGGAAGAGCACACGTCT

Illumina index

CAAGCAGAAGACGGCATACGAGNNNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT

P5-Illumina-2

AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT

45JvA

ATTCTGATATTTCACATTCTTAAAATAAAGTGG

94JvA

ACCGTTATAGTTATTAACTTGGGTCAAACATTT