Table 1 Performance of different utilities of EpiMINE in generating results mentioned in this manuscript along with number of files processed
From: EpiMINE, a computational program for mining epigenomic data
Mac Book laptop—Mac OS 10.11—4 GB RAM | ||||||
|---|---|---|---|---|---|---|
Figure | Utility | Real | User | Sys | Number of bam files processed | Number of bed files processed |
1A | ENRICH | 3m4.420s | 1m40.539s | 0m8.173s | Â | 51 |
1B, C | CoREG | 2m16.439s | 1m7.569s | 0m3.969s | Â | 51 |
1D, E | MCOR | 74m41.883s | 69m40.924s | 2m19.813s | 27 | 1 |
2A, B | QIRI | 26m27.703s | 23m25.298s | 0m47.114s | 12 | 2 |
2C, D | QARI | 240m28.371s | 182m38.537s | 39m15.460s | 8 | 1 |
3A | PMS | 287m16.025s | 240m14.324s | 22m8.330s | 2 | 4 |
3B | PMS | 125m56.986s | 119m0.587s | 4m43.368s | 2 | 4 |
3F | PMS | 62m1.064s | 45m49.599s | 9m50.006s | 5 | 1 |
4A, B, C | TDIFF | 4m14.759s | 3m8.678s | 0m3.862s | 2 | 1 |
4D, E | MDIFF | 37m15.644s | 35m2.737s | 0m50.188s | 36 | 1 |
5A | ABRI | 8m11.794s | 6m5.741s | 0m7.175s | Â | 51 |
5C | VarSEL | 143m28.846s | 143m28.846s | 3m25.513s | 49 | 2 |
5D | CLASS | 29m0.011s | 26m41.527s | 0m44.029s | 14 | 2 |