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Table 3 Top ten MeCP2-enriched promoters and genes identified by ChIP-seq in the DRG from SNI model compared to sham control

From: Genome-wide redistribution of MeCP2 in dorsal root ganglia after peripheral nerve injury

Nearest refseq Gene name Gene description Tag count p value
Sham SNI
Promoters with enriched MeCP2 binding
 NM_021478 Tulp1 Tubby like protein 1 0 30 2.85E−06
 NM_027398 Kcnip1 Kv channel-interacting protein 1 0 19 0.000195
 NM_170757 Ccdc186 Coiled-coil domain containing 186 0 16 0.000629
 NM_001034898 Ms4a15 Membrane-spanning 4-domains, subfamily A, member 15 0 25 1.92E−05
 NR_033168 Snora28 Small nucleolar RNA, H/ACA box 28 0 26 1.31E−05
 NM_001113379 Lrrc32 Leucine rich repeat containing 32 0 25 1.92E−05
 NM_011305 Rxra Retinoid X receptor alpha 0 15 0.000932
 NM_018820 Sertad1 SERTA domain containing 1 0 17 0.000425
 NM_001011525 Olfr1415 Olfactory receptor 1415 0 16 0.000629
 NM_133759 Zbtb3 Zinc finger and BTB domain containing 3 0 25 1.92E−05
Gene bodies with enriched MeCP2 binding
 NM_001001807 Olfr279 Olfactory receptor 279 0 21 8.97E−05
 NM_011540 Tcap Titin-cap 0 16 0.000629
 NM_011971 Psmb3 Proteasome (prosome, macropain) subunit, beta type 3 0 19 0.000195
 NM_198414 Paqr9 Progestin and adipoQ receptor family member IX 0 20 0.000132
 NM_133668 Slc25a3 Solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 0 15 0.000932
 NM_001160356 Uqcc3 Ubiquinol-cytochrome c reductase complex assembly factor 3 0 15 0.000932
 NM_001190356 Gm4832 Predicted gene 4832 0 15 0.000932
 NM_133759 Zbtb3 Zinc finger and BTB domain containing 3 0 25 1.92E−05
 NM_009296 Supt4a Suppressor of Ty 4A 0 20 0.000132
 NM_009756 Bmp10 Bone morphogenetic protein 10 0 18 0.000288