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Table 2 Sources of eQTL databases

From: Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genome

Tool Features URL PMID
NCBI eQTL browser cis‐eQTL from liver, lymphoblastoid, brain http://www.ncbi.nlm.nih.gov/projects/gap/eqtl/index.cgi  
seeQTL browser for cis‐eQTL, and trans-eQTL from lymphoblastoid, brain, monocyte http://www.bios.unc.edu/research/genomic_software/seeQTL/ 22171328
Chicago eQTL QTL (eQTL, dsQTL, trQTL, exonQTL) from lymphoblastoid, brain, liver, fibroblast, T‐cells http://eqtl.uchicago.edu/cgi--‐bin/gbrowse/eqtl/  
GTEx Portal >60 tissues eQTL data and eQTL IGV browser http://www.gtexportal.org/home/ 25954001
GeneVar >5 tissues eQTL, meQTL data and visualization https://www.sanger.ac.uk/resources/software/genevar/ 20702402
Blood eQTL Blood cis- and trans-eQTLs http://genenetwork.nl/bloodeqtlbrowser/ 24013639
Geuvadis QTL (eQTL,mirQTL, trQTL) from lymphoblastoid
cell lines
http://www.ebi.ac.uk/Tools/geuvadis--‐das/ 24037378
  1. mirQTL miRNA QTL, trQTL transcript ratio QTL, dsQTL Dnase I sensitivity QTL