Skip to main content

Table 2 Sources of eQTL databases

From: Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genome

Tool

Features

URL

PMID

NCBI eQTL browser

cis‐eQTL from liver, lymphoblastoid, brain

http://www.ncbi.nlm.nih.gov/projects/gap/eqtl/index.cgi

 

seeQTL

browser for cis‐eQTL, and trans-eQTL from lymphoblastoid, brain, monocyte

http://www.bios.unc.edu/research/genomic_software/seeQTL/

22171328

Chicago eQTL

QTL (eQTL, dsQTL, trQTL, exonQTL) from lymphoblastoid, brain, liver, fibroblast, T‐cells

http://eqtl.uchicago.edu/cgi--‐bin/gbrowse/eqtl/

 

GTEx Portal

>60 tissues eQTL data and eQTL IGV browser

http://www.gtexportal.org/home/

25954001

GeneVar

>5 tissues eQTL, meQTL data and visualization

https://www.sanger.ac.uk/resources/software/genevar/

20702402

Blood eQTL

Blood cis- and trans-eQTLs

http://genenetwork.nl/bloodeqtlbrowser/

24013639

Geuvadis

QTL (eQTL,mirQTL, trQTL) from lymphoblastoid

cell lines

http://www.ebi.ac.uk/Tools/geuvadis--‐das/

24037378

  1. mirQTL miRNA QTL, trQTL transcript ratio QTL, dsQTL Dnase I sensitivity QTL