Table 2 All ENCODE Tier1 cell line data used in this study [8]
From: Modelling the conditional regulatory activity of methylated and bivalent promoters
Data type | Data source |
|---|---|
RNA-seq | GSM958730 (GM12878, 2 replicates) |
GSM958737 (H1-hESC, 2 replicates) | |
GSM958731 (K562, 2 replicates) | |
TSS | Ensembl hg19/GRCh37 [44] |
Methyl RRBS (GM12878) | GSM683906 (replicate 1) |
GSM683927 (replicate 2) | |
ChIP-seq (GM12878) | GSM733767 (H2A.Z) |
GSM733758 (H3K27me3) | |
GSM733708 (H3K4me3) | |
GSM733664 (H3K9me3) | |
Methyl RRBS (H1-hESC) | GSM683770 (replicate 1) |
GSM683879 (replicate 2) | |
ChIP-seq (H1-hESC) | GSM1003579 (H2A.Z) |
GSM733748 (H3K27me3) | |
GSM733657 (H3K4me3) | |
GSM1003585 (H3K9me3) | |
Methyl RRBS (K562) | GSM683856 (replicate 1) |
GSM683780 (replicate 2) | |
ChIP-seq (K562) | GSM733786 (H2A.Z) |
GSM733658 (H3K27me3) | |
GSM733680 (H3K4me3) | |
GSM733776 (H3K9me3) |