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Table 1 ChIP-seq datasets

From: Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility

Feature Cell line Number of peaks Filename at UCSC Genome Browser or GEO series number
TAL1 G1E-ER4 + E2 4,915 wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputPk.broadPeak.gz
GATA1 G1E-ER4 + E2 13,123 wgEncodePsuTfbsG1eer4e2Gata1aME0S129InputPk.broadPeak.gz
EP300 MEL 31,342 wgEncodeSydhTfbsMelP300IggrabPkV2.narrowPeak.gz, wgEncodeSydhTfbsMelP300sc584IggrabPk.narrowPeak.gz
SMAD1 G1E-ER4 + E2 + BMP4 1,586 GSE29193
H3K4me1 G1E-ER4 + E2 105,231 wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputPk.broadPeak.gz
H3K4me3 G1E-ER4 + E2 72,495 wgEncodePsuHistoneG1eer4e2H3k04me3ME0S129InputPk.broadPeak.gz
H3K27me3 G1E-ER4 + E2 53,587 wgEncodePsuHistoneG1eer4e2H3k27me3ME0S129InputPk.broadPeak.gz
H3K9me3 G1E-ER4 + E2 69,929 wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputPk.broadPeak.gz
H3K27ac G1E-ER4 + E2 31,535 GSE61349
DNaseI hypersensitivity G1E-ER4 + E2 93,705 wgEncodePsuDnaseG1eer4S129ME0Diffd24hPkRep1.narrowPeak.gz
  1. Note: G1E-ER4 + E2: cells treated with estradiol for 24 h.