Cancer type | Variably methylated probes | Differentially methylated probes | Control | Tumor | CIMP- | CIMPi | CIMP+ | CIMP− | CIMP+ |
---|---|---|---|---|---|---|---|---|---|
pan-cancer | pan-cancer | ||||||||
BLCA (bladder urothelial carcinoma) | 49,148 | 338 | 20 | 201 | 78 | 84 | 39 | 43 | 14 |
BRCA (breast invasive carcinoma) | 46,722 | 1,311 | 96 | 676 | 270 | 244 | 162 | 76 | 47 |
COAD (colon adenocarcinoma) | 46,168 | 2,656 | 38 | 274 | 96 | 92 | 86 | 71 | 60 |
HNSC (head and neck squamous cell carcinoma) | 44,100 | 1,228 | 50 | 426 | 156 | 186 | 84 | 115 | 55 |
KIRC (kidney renal clear cell carcinoma) | 26,148 | 196 | 160 | 296 | 126 | 94 | 76 | 97 | 65 |
KIRP (kidney renal papillary cell carcinoma) | 28,083 | 40 | 45 | 147 | 60 | 59 | 28 | NA | NA |
LIHC (liver hepatocellular carcinoma) | 51,875 | 544 | 50 | 151 | 45 | 61 | 45 | NA | NA |
LUAD (lung adenocarcinoma) | 42,822 | 1,667 | 32 | 437 | 161 | 169 | 107 | 67 | 48 |
LUSC (lung squamous cell carcinoma) | 40,606 | 1,430 | 42 | 359 | 140 | 142 | 77 | 32 | 11 |
PAAD (pancreatic adenocarcinoma) | 27,899 | 1,602 | 9 | 65 | 16 | 33 | 16 | NA | NA |
PRAD (prostate adenocarcinoma) | 33,718 | 450 | 49 | 248 | 74 | 122 | 52 | NA | NA |
READ (rectum adenocarcinoma) | 40,496 | 1,255 | 7 | 96 | 31 | 39 | 26 | 22 | 22 |
STAD (stomach adenocarcinoma) | 62,606 | 1,110 | 2 | 260 | 109 | 95 | 56 | NA | NA |
THCA (thyroid carcinoma) | 21,945 | 0 | 56 | 508 | NA | NA | NA | NA | NA |
UCEC (uterine corpus endometrioid carcinoma) | 43,040 | 1,430 | 46 | 407 | 155 | 139 | 113 | 54 | 34 |