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Table 1 Yeast and mammalian ATP-dependent chromatin remodeling proteins and complexes implicated in the DDR.

From: ATP-dependent chromatin remodeling in the DNA-damage response

Family

Complex

ATPase

Additional subunits

Species

Ref

SWI/SNF

SWI/SNF

Snf2

Swi3, Snf12, Arp7, Arp9, Snf11, Snf5, Snf6, Swi1, Swp82, Taf14

Yeast

[157]

 

RSC

Sth1

Rsc1-4, Rsc6, Rsc8-, Rsc9, Rsc30, Rsc58, Rsc7, Arp7, Arp9, Sfh1, Htl1, Ldb7, Rtt102

Yeast

[157]

 

BAF

SMARCA4/BRG1, SMARCA2/BRM

ARID1A, SMARCC2, SMARCC1, SMARCD1-3, SMARCE1, ACTL6A, SMARCB1/SNF5, BAF45a-d, BRD7, BRD9, ACTB

Mammal

[17, 157]

 

PBAF

SMARCA4/BRG1, SMARCA2/BRM

ARID2, PBRM1, SMARCC2, SMARCC1, SMARCD1-3, SMARCE1, ACTL6A, SMARCB1/SNF5, BAF45, BRD7, BRD9, ACTB

Mammal

[157]

INO80

INO80

Ino80

Arp4, Arp5, Arp8, Act1, Rvb1, Rvb2, Taf14, Ies1-6, Nhp10

Yeast

[158]

 

SWR1

Swr1

Arp4, Arp6, Act1, Rvb1, Rvb2, Yaf9, Vps71, Vps72, Swc3-5, Swc7, Bdf1

Yeast

[17, 158]

 

INO80

INO80

RUVBL1, RUVBL2, ACTL6A, ACTR5/Arp5, ACTR8/Arp8, INO80B, INO80C, TFPT, NFRKB, MCRS1, INO80E, INO80D

Mammal

[17]

 

TRRAP/Tip601

EP400/p400

RUVBL1, RUVBL2, KAT5/Tip60, ACTL6A, ACTB, YEATS4, DMAP1, VPS72, BRD8, MORF4L1, MORF4L2, MEAF6, C20orf20, EPC1, EPC2, ING3

Mammal

[17]

CHD

NuRD

CHD3, CHD4

MBD2, MBD3, MTA1-3, HDAC1, HDAC2, RBBP7, RBBP4, GATAD2A, GATAD2B

Mammal

[17, 159]

  

CHD22

 

Mammal

[137]

ISWI

ISWIa

Isw1

Ioc3

Yeast

[160]

 

ISWIb

Isw1

Ioc2, Ioc4

Yeast

[160]

 

ISW2

Isw2

Itc1, Dpb4, Dls1

Yeast

[17, 160]

 

ACF

SMARCA5/hSNF2H

BAZ1A/hACF1

Mammal

[17, 160]

 

CHRAC

SMARCA5/hSNF2H

BAZ1A/hACF1, CHRAC1, POLE3

Mammal

[17, 160]

 

WICH

SMARCA5/hSNF2H

BAZ1B/WSTF

Human

[17, 160]

 

NURF

SMARCA1/hSNF2L

BPTF, RBBP7, RBBP4

Mammal

[17, 160]

Uncategorized

 

Rad16

 

Yeast

[48, 49]

  

Rad26

 

Yeast

[161]

  

Rad5

 

Yeast

[162]

  

Rdh54

 

Yeast

[163, 164]

  

CHD1L/ALC1

 

Mammal

[132, 133]

  

ERCC6/CSB

 

Mammal

[165]

  

HLTF

 

Mammal

[166, 167]

  

RAD54L

 

Mammal

[90, 168]

  

RAD54B

 

Mammal

[169171]

  

SHPRH

 

Mammal

[167, 172]

  

SMARCAL1

 

Mammal

[173, 174]

  1. See main text for references in which the different ATP-dependent chromatin-remodeling complexes are implicated in the DNA-damage response.