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Table 3 DNA methylation of identified DMRs in different tissues and gestational agesa

From: Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies

Index

Gene

Chromosome

Tissue-specificb

Change in gestationc

Stable non-tissue-specificd

Known imprinted genese

1

DNAJC6

1

Yf

Y

N

N

2

LASS2

1

Yf

Y

N

N

3

PEX5

12

Yf

Y

N

N

4

RASGRF1

15

Yf

N

N

N

5

AKAP10

17

Yf

N

N

N

6

AIFM2

10

Yf

N

N

N

7

APC

5

Yf

N

N

N

8

ARHGAP4

X

Yf

N

N

N

9

ARMC3

10

Yf

N

N

N

10

C3orf62

3

Yf

N

N

N

11

CD83

6

Yf

N

N

N

12

CMTM3

16

Yf

N

N

N

13

DNMT1

19

Yf

N

N

N

14

G0S2

1

Yf

N

N

N

15

GATA4

8

Yf

N

N

N

16

LEP

7

Yf

N

N

N

17

MCCC1

3

Yf

N

N

N

18

NUDT12

5

Yf

N

N

N

19

PCK2

14

Yf

N

N

N

20

RHOBTB3

5

Yf

N

N

N

21

SLC46A2

9

Yf

N

N

N

22

SNCB

5

Yf

N

N

N

23

SORD

15

Yf

N

N

N

24

ST8SIA1

12

Yf

N

N

N

25

TBX6

16

Yf

N

N

N

26

TMEM17

2

Yf

N

N

N

27

ZNF232

17

Yf

N

N

N

28

ZNF396

18

Yf

N

N

N

29

AK094715

6

Y

Y

N

N

30

DIRAS3

1

Y

Y

N

Y

31

CMTM8

3

Y

Y

N

N

32

SEMA3B

3

Y

Y

N

N

33

CDKN1C

11

Y

N

N

Y

34

H19

11

Y

N

N

Y

35

KCNQ1

11

Y

N

N

Y

36

MEG3

14

Y

N

N

Y

37

PEG10

7

Y

N

N

Y

38

C10orf125

10

Y

N

N

N

39

CCR10

17

Y

N

N

N

40

CYP2W1

7

Y

N

N

N

41

FIGNL1

7

Y

N

N

N

42

IGFBP1

7

Y

N

N

N

43

MOV10L1

22

Y

N

N

N

44

P2RY6

11

Y

N

N

N

45

PARP12

7

Y

N

N

N

46

SAMD10

20

Y

N

N

N

47

L3MBTL

20

N

Y

N

Y

48

ACPL2

3

N

Y

N

N

49

REEP6

19

N

Y

N

N

50

GNAS(M)

20

N

N

Y

Y

51

GNAS(P)

20

N

N

Y

Y

52

GRB10

7

N

N

Y

Y

53

MEST

7

N

N

Y

Y

54

NAP1L5

4

N

N

Y

Y

55

PEG3

19

N

N

Y

Y

56

PLAGL1

6

N

N

Y

Y

57

SGCE

7

N

N

Y

Y

58

SNURF

15

N

N

Y

Y

59

ZIM2

19

N

N

Y

Y

60

ZNF597

16

N

N

Y

Y

61

FAM50B

6

N

N

Y

N

62

FGF12

3

N

N

Y

N

63

IRF7

11

N

N

Y

N

  1. aDMR, differentially methylated region; bmulticlass comparison of methylation level in brain, kidney, muscle, midgestation placenta and blood with FDR <0.1%; cMulticlass comparison of methylation level in early-gestation, midgestation and term placenta, FDR <0.1%; dDMRs with no statistically significant changes in methylation level in different tissues and gestational ages; eBased on the public databases (http://igc.otago.ac.nz/ and http://www.geneimprint.com/); fplacenta-specific methylation.