Assay | Chr | Location | P-O-O methylation mark | Germ-line/somatic | Average somatic methylation | Location within gene | CpG island | CTCF | CpG density |
---|---|---|---|---|---|---|---|---|---|
DIRAS3 (3) | 1 | 68285444 | Maternal | Somatic | 70.22 | Gene body Exonic | Yes | YV | 6.2 |
DIRAS3 (2) | 1 | 68288969 | Maternal | Germ-line# | 50.42 | Promoter/Ex 1 | Yes | N | 5.6 |
DIRAS3 (1) | 1 | 68290053 | Maternal | Germ-line# | 46.09 | 5' upstream (GPR) | Yes | YV | 5.4 |
ZDBF2 | 2 | 206834066 | Paternal | Germ-line | 47.65 | Intergenic | No | Y | 1.4 |
NAP1L5 | 4 | 89837958 | Maternal | Germ-line | 50.16 | Embeded gene promoter | No | N | 7.2 |
ZAC | 6 | 144371274 | Maternal | Germ-line | 40.83 | Isoform promoter | Yes | N | 11.2 |
IGF2R-2 | 6 | 160346534 | Unknown | Unknown | 81.34 | Gene body intronic | Yes | N | 6.6 |
SLC22A1 | 6 | 160475377 | Unknown | Unknown | 82.78 | Gene body Exonic | Yes | N | 5.6 |
SLC22A3 | 6 | 160688909 | Unknown | Unknown | 39.89 | Promoter/Ex 1 | Yes | YV | 7.6 |
MEST (s) | 7 | 129913465 | Maternal | Somatic | 28.15 | Isoform promoter | Yes | Y | 8.2 |
MEST | 7 | 129918562 | Maternal | Germ-line | 45.84 | Isoform promoter | Yes | Y | 7 |
GRB10 (g) | 7 | 50817567 | Maternal | Germ-line | 45.47 | Isoform promoter | Yes | YV | 12.6 |
GRB10 (s) | 7 | 50829108 | Maternal | Somatic | 19.19 | Isoform promoter | Yes | YV | 6 |
PEG10 | 7 | 94123850 | Maternal | Germ-line | 55.63 | Promoter | Yes | Y | 6.4 |
PON1 | 7 | 94791675 | Unknown | Unknown | 34.04 | Promoter/Ex 1 | Yes | N | 4.6 |
INPP5FV2 | 10 | 121568151 | Maternal | Germ-line | 60.89 | Isoform promoter | Yes | YV | 11.2 |
H19 DMR | 11 | 1977714 | Paternal | Germ-line | 45.23 | 5' upstream (GPR) | No | Y | 5.8 |
IGF2 (2) | 11 | 2110885 | Paternal | Somatic | 35.41 | Gene body Exonic | Yes | N | 6.2 |
IGF2 (0) | 11 | 2126069 | Paternal | Somatic | 54.59 | Isoform promoter | No | N | 2.2 |
KCNQ1 | 11 | 2422247 | Unknown | Unknown | 22.27 | 5' upstream (GPR) | Yes | YV | 6.8 |
KvDMR | 11 | 2678628 | Maternal | Germ-line | 50.68 | antisense RNA promoter | Yes | YV | 5.6 |
KCNQ1DN | 11 | 2847182 | Unknown | Unknown | 26.22 | 5' upstream (GPR) | Yes | N | 11.4 |
CDKN1C | 11 | 2861764 | None | None | 12.07 | Gene body Exonic | Yes | Y | 10.8 |
OSBPL5 (3) | 11 | 3098345 | Unknown | Unknown | 82.66 | Gene body Exonic | Yes | N | 4.2 |
RB1 | 13 | 47791152 | Maternal | Germ-line | 59.47 | Gene body intronic | Yes | N | 6.4 |
DLK | 14 | 100262671 | Paternal | Somatic | 56.05 | Promoter/Ex 1 | Yes | N | 9.2 |
IG-DMR | 14 | 100345582 | Paternal | Germ-line | 58.17 | Intergenic | No | N | 2.4 |
MEG3-US | 14 | 100360453 | Paternal | Somatic | 49.55 | Intergenic | Yes | N | 6.6 |
MEG3 | 14 | 100361829 | Paternal | Somatic | 48.99 | Promoter/Ex 1 | Yes | YV | 6.2 |
RTL | 14 | 100419312 | None | None | 88.27 | Gene body Exonic | Yes | N | 6.4 |
MKRN3 | 15 | 21362387 | Unknown | Unknown | 62.44 | Gene body Exonic | No | N | 4.4 |
SNRPN | 15 | 22751911 | Maternal | Germ-line | 47.12 | Isoform promoter | Yes | N | 7.8 |
UBE3A | 15 | 23234499 | None | None | 3.15 | Promoter/Ex 1 | Yes | Y | 9.6 |
ATP10A | 15 | 23658720 | None | None | 13.82 | Promoter/Ex 1 | Yes | N | 5.4 |
GABRB3 | 15 | 24425436 | Unknown | Unknown | 47.8 | Isoform promoter | Yes | YV | 7.6 |
GABRA5 | 15 | 24663372 | Unknown | Unknown | 87.29 | Promoter/Ex 1 | Yes | YV | 13 |
TCEB3C | 18 | 42797692 | None | None | 86.52 | Embedded gene pronoterd | Yes | YV | 7.6 |
NLRP2 | 19 | 60186163 | Unknown | Unknown | 61.93 | Gene-body Exonic | Yes | N | 7 |
PEG3/ZIM2 | 19 | 62043527 | Maternal | Germ-line | 49.92 | Gene body intronic | Yes | N | 9.2 |
USP29 | 19 | 62322335 | Unknown | Unknown | 43.27 | Intergenic | Yes | N | 7.4 |
ZIM3 | 19 | 62348129 | Unknown | Unknown | 74.21 | Promoter/Ex 1 | No | N | 1 |
MCTS2 | 20 | 21441323 | Maternal | Germ-line | 44.72 | Embedded gene promoter | Yes | Y | 6.6 |
NNAT | 20 | 35582455 | Maternal | Germ-line | 77.93 | Embedded gene promoter | Yes | YV | 5.2 |
BLCAP | 20 | 35589631 | None | None | 8.37 | Promoter/Ex 1 | Yes | YV | 7.6 |
L3MBTL | 20 | 41576732 | Maternal | Germ-line | 51.23 | Gene body Exonic (Ex1) | Yes | Y | 7.6 |
NESP | 20 | 56848977 | Paternal | Somatic | 45.7 | Isoform promoter | Yes | Y | 9.2 |
NESPAS | 20 | 56860398 | Maternal | Somatic | 47.53 | Isoform promoter | Yes | N | 6.4 |
GNAS XL | 20 | 56864018 | Maternal | Germ-line | 43.98 | Isoform promoter | Yes | N | 5.6 |
GNAS 1A | 20 | 56898576 | Maternal | Somatic | 25.1 | Isoform promoter | Yes | N | 12 |